CX289594

Overview
NameCX289594
Unique NameCX289594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length451
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_HALLT (Peptidyl-tRNA hydrolase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=pth PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.207e-15
Identity = 39/103 (37.86%), Postives = 63/103 (61.17%), Query Frame = 1
Query:    4 RQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTG 312
            R D+ MG GK+A+Q AHA+   Y +   + R + +KW+  GQ K+V+   ++ ++ +L + A+  G+P  ++ DAG TQ+  G+ T LA+GP     VD VTG
Sbjct:    8 RTDIGMGEGKLAAQVAHASLSAYQD---AGRRVRKKWQGEGQKKVVLKGDSESQLFELADKADKEGIPYAIIRDAGHTQLEPGTVTALAVGPARDDTVDRVTG 107          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_METJA (Peptidyl-tRNA hydrolase OS=Methanocaldococcus jannaschii GN=pth PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.059e-14
Identity = 37/109 (33.94%), Postives = 63/109 (57.80%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            +R DL MG GK+ +Q  HA    + +  + +   + +W + GQ K+VV   +++E+  ++  A + GLP  ++ DAG TQ+  G+ T +AIGP     +D +TG  +LL
Sbjct:    7 IRNDLGMGKGKMVAQGGHAIIEAFLDAKRKNPRAVDEWLREGQKKVVVKVNSEKELIDIYNKARSEGLPCSIIRDAGHTQLEPGTLTAVAIGPEKDEKIDKITGHLKLL 115          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_METM7 (Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pth PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.254e-14
Identity = 38/109 (34.86%), Postives = 61/109 (55.96%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            +R DLKMG GK+A+Q  HA+   +    +     +  W   GQ K+V+   +++E+ ++++     GLP  ++ DAGRTQV  GS T + IGP  +  +  VT   +LL
Sbjct:    8 IRNDLKMGKGKMAAQACHASIQAFLHAQKISSSAVSGWMNEGQKKVVLKVNSEKELLEIFKNVNIEGLPCSLIRDAGRTQVEPGSLTAVGIGPEKEEKISKVTKDLKLL 116          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_METVS (Peptidyl-tRNA hydrolase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pth PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.862e-14
Identity = 37/109 (33.94%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            +R DLKMG GK+A+Q  HA+   Y    +     +  W   GQ K+V+   +++E+ +++      GLP  ++ DAG+TQ+  GS T + IGP  +  +  VT   +LL
Sbjct:    8 IRNDLKMGKGKMAAQACHASIQAYLHAQKISPSAVMYWMNEGQKKVVLKVNSEKELLEIFRDVNIDGLPCSLIRDAGKTQIEPGSLTAVGIGPEKEDKISKVTKNLKLL 116          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_METM6 (Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pth PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.862e-14
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            +R DLKMG GK+A+Q  HA+   +    +     +  W   GQ K+V+   +++E+ ++++     GLP  ++ DAGRTQ+  GS T + IGP  +  +  VT   +LL
Sbjct:    8 IRNDLKMGKGKMAAQACHASLQAFLHAQKISSSAVSGWMNEGQKKVVLKVNSEKELLEIFKNVNIEGLPCSLIRDAGRTQIEPGSLTAVGIGPEKEEKISKVTKDLKLL 116          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_METM5 (Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pth PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.862e-14
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            +R DLKMG GK+A+Q  HA+   +    +     +  W   GQ K+V+   +++E+ ++++     GLP  ++ DAGRTQ+  GS T + IGP  +  +  VT   +LL
Sbjct:    8 IRNDLKMGKGKMAAQACHASIQAFLHAQKISSSAVSGWMNEGQKKVVLKVNSEKELLEIFKNVNIEGLPCSLIRDAGRTQIEPGSLTAVGIGPEKEEKISKVTKDLKLL 116          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_HALWD (Peptidyl-tRNA hydrolase OS=Haloquadratum walsbyi (strain DSM 16790) GN=pth PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.171e-13
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 1
Query:    4 RQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 324
            R DL+MG GK+A+Q AHA+     +         ++W+  GQ KIV+   +++++ +L + AE  G+P  VV DAG TQ+  G+ T +AIGP     +D +TG   L
Sbjct:    8 RADLRMGKGKLAAQVAHASLSAVEDTGTRSE---KQWKGGGQKKIVLKANSEKKLFQLADEAERDGIPHAVVRDAGHTQLEPGTVTCIAIGPDSDENIDRITGSLSL 111          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_META3 (Peptidyl-tRNA hydrolase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=pth PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.529e-13
Identity = 34/109 (31.19%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            +R DLKMG GK+ +Q +HA+   +    +++  + ++W   GQ K+V+   +++E+ +++  A   G    ++ DAG TQ+ +G+ T + IGP  +  ++ +TGK +LL
Sbjct:    8 LRNDLKMGKGKLVAQGSHASLISFLNTQKNNPSVAKEWLNEGQKKVVLKVNSEKELFEVFRDANIDGFSCCLIRDAGHTQIPSGTATAVGIGPDKEEKLEKITGKLKLL 116          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_METMP (Peptidyl-tRNA hydrolase OS=Methanococcus maripaludis GN=pth PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.406e-13
Identity = 36/109 (33.03%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRLL 327
            +R DLKMG GK+A+Q  HA+   +    +     +  W   GQ K+V+   +++E+ ++++     GLP  ++ DAGRTQ+  GS T + IGP  +  +  V    +LL
Sbjct:    8 IRNDLKMGKGKMAAQACHASIQAFLHAQKISSSAVSGWMNEGQKKVVLKVNSEKELLEIFKNVNIEGLPCSLIRDAGRTQIEPGSLTAVGIGPEKEEKISKVKKDLKLL 116          
BLAST of CX289594 vs. ExPASy Swiss-Prot
Match: PTH_NANEQ (Peptidyl-tRNA hydrolase OS=Nanoarchaeum equitans GN=pth PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.188e-11
Identity = 32/108 (29.63%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    1 VRQDLKMGSGKIASQCAHAATGMYAELMQSDRHLLRKWEQCGQPKIVVTCKNQQEMNKLWEVAENTGLPTFVVADAGRTQVSAGSKTVLAIGPGPKSLVDSVTGKQRL 324
            V + L +G GK+ +Q AHA+     ++ ++++ L  +W + G  K+V+   + +E+  + + A   G+   ++ DAG+TQVS G+   +A+GP     +D +TG  +L
Sbjct:    7 VCRKLDIGKGKLCAQVAHASLDAALKVYRNNKELFDRWYREGAKKVVLKVNSLEELLDIAKKAMEKGIVVSIIRDAGKTQVSPGTIICIALGPDEDEKIDQITGNLKL 114          
The following BLAST results are available for this feature:
BLAST of CX289594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
PTH_HALLT6.207e-1537.86Peptidyl-tRNA hydrolase OS=Halorubrum lacusprofund... [more]
PTH_METJA1.059e-1433.94Peptidyl-tRNA hydrolase OS=Methanocaldococcus jann... [more]
PTH_METM75.254e-1434.86Peptidyl-tRNA hydrolase OS=Methanococcus maripalud... [more]
PTH_METVS6.862e-1433.94Peptidyl-tRNA hydrolase OS=Methanococcus vannielii... [more]
PTH_METM66.862e-1433.94Peptidyl-tRNA hydrolase OS=Methanococcus maripalud... [more]
PTH_METM56.862e-1433.94Peptidyl-tRNA hydrolase OS=Methanococcus maripalud... [more]
PTH_HALWD1.171e-1337.38Peptidyl-tRNA hydrolase OS=Haloquadratum walsbyi (... [more]
PTH_META31.529e-1331.19Peptidyl-tRNA hydrolase OS=Methanococcus aeolicus ... [more]
PTH_METMP3.406e-1333.03Peptidyl-tRNA hydrolase OS=Methanococcus maripalud... [more]
PTH_NANEQ3.188e-1129.63Peptidyl-tRNA hydrolase OS=Nanoarchaeum equitans G... [more]

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Properties
Property NameValue
Genbank descriptionC02015A08SK IF1 Citrus clementina cDNA clone C02015A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289594 ID=CX289594; Name=CX289594; organism=Citrus clementina; type=EST; length=451bp
GTTAGGCAAGACCTGAAGATGGGGAGTGGAAAGATTGCATCACAATGTGC
CCATGCAGCCACTGGGATGTATGCAGAACTAATGCAAAGTGACCGGCACC
TTCTGAGAAAATGGGAGCAATGTGGGCAGCCCAAGATAGTTGTTACGTGC
AAGAATCAACAAGAAATGAATAAGCTGTGGGAAGTAGCTGAAAACACGGG
CCTTCCAACTTTTGTTGTTGCGGATGCTGGACGGACACAGGTTTCAGCTG
GGTCGAAGACGGTTCTTGCCATCGGACCTGGACCCAAATCTTTGGTGGAT
TCTGTGACAGGGAAACAGCGCCTGCTCTAGTTATGCTTAAGAATGGAGGA
CTTTTTGCTTAAAATTTCCCGGATGACAATGTTAAAAGATCAAGATTACC
AACAAAATCTTCTTGACTCTTGGTTTCATTTGCCAGGCAGCTTTCATATT
C
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