CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.275e-78
Identity = 143/212 (67.45%), Postives = 175/212 (82.55%), Query Frame = 3
Query:   96 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCST 731
            D EYDYLFK+VLIGDSGVGKSN+LSRFT+NEF LESKSTIGVEFATR+L+++ K VKAQIWDTAGQERYRAITSAYYRGAVGALL YD+T+  TF NV RWLRELR+H D NI+++L GNK+DL+HL AVS +D +A  ++E L F+ETSAL+A NV+ AF  +LT IY I+SK+A+ A     ++ LP +G TINV D+S+ +KR GCCST
Sbjct:    6 DHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTINVSDNSANVKR-GCCST 216          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 6.618e-78
Identity = 141/214 (65.89%), Postives = 180/214 (84.11%), Query Frame = 3
Query:   90 KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCST 731
            +PDEEYDYLFK+VLIGDSGVGKSNLLSRFT+NEF LESKSTIGVEFATR+L+++ + VKAQIWDTAGQERYRAITSAYYRGA+GALLVYDVT+  TF+NV RWL+ELR+H D NI++MLIGNKTDL+HL AV+TED +++AE+E L F+ETSAL+A NVE AF  +L+++Y+I+SK+++ +    TA+    +G+TI+V   S    +  CCS+
Sbjct:    4 RPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQT-TANANIKEGQTIDVAATSESNAKKPCCSS 216          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.515e-77
Identity = 138/197 (70.05%), Postives = 172/197 (87.31%), Query Frame = 3
Query:   96 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINV 686
            ++EYDYLFK VLIGDSGVGKSNLL RFT+NEFN+ESKSTIGVEFATR++ +DNK +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+T+ ++F NVGRWL+ELREH D NI++ML+GNKTDL HL AVSTE+ +AFA + +L F+ETSA+DA+NVE AF  VLT+I++IVS R++EAG +G     P+ G+T+N+
Sbjct:    4 EDEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSLEAGDDGVH---PTAGQTLNI 197          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 288.5 bits (737), Expect = 2.515e-77
Identity = 143/216 (66.20%), Postives = 176/216 (81.48%), Query Frame = 3
Query:   87 YKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTA-STLPSKGETINVKDDSSVLKRIGCCST 731
            ++ D+EYDYLFK+VLIGDSGVGKSN+LSRFT+NEF LESKSTIGVEFATR+ +++ K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF NV RWLRELR+H D NI++M+ GNK+DL HL +V+ EDG++ AE+E L F+ETSAL+ATNVE AF  +L +IY I+SK+A+ A     A S +P +G TINV D S   KR  CCS+
Sbjct:    3 HRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGTTINVDDTSGGAKR-ACCSS 217          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.248e-76
Identity = 142/219 (64.84%), Postives = 176/219 (80.37%), Query Frame = 3
Query:   87 YKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGE-----TINVKDDSSVLKRIGCCS 728
            +KPD++YDYLFK+VLIGDSGVGKSNLLSRFT+NEF+LESKSTIGVEFATRS+++D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+T+  TF+NV RWL+ELR+H D NI++ML+GNK+DL+HL  V TE  +AF E+E L F+ETSAL++TNVE AF ++LT+IY IVSK+ +++  N      P  GE      I+   D    K+ GCCS
Sbjct:    3 HKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDN-----RPKIGEGRDVIVIDNAHDDGGKKKGGCCS 216          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 281.182 bits (718), Expect = 4.015e-75
Identity = 131/177 (74.01%), Postives = 161/177 (90.96%), Query Frame = 3
Query:   96 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAV 626
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+DLRHL AV T++ +AFAE+ +L F+ETSALD+TNVE AF  +LT+IY+IVS++ +
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 281.182 bits (718), Expect = 4.015e-75
Identity = 131/177 (74.01%), Postives = 161/177 (90.96%), Query Frame = 3
Query:   96 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAV 626
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+DLRHL AV T++ +AFAE+ +L F+ETSALD+TNVE AF  +LT+IY+IVS++ +
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 281.182 bits (718), Expect = 4.015e-75
Identity = 131/177 (74.01%), Postives = 161/177 (90.96%), Query Frame = 3
Query:   96 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAV 626
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+DLRHL AV T++ +AFAE+ +L F+ETSALD+TNVE AF  +LT+IY+IVS++ +
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 281.182 bits (718), Expect = 4.015e-75
Identity = 131/177 (74.01%), Postives = 161/177 (90.96%), Query Frame = 3
Query:   96 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAV 626
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+DLRHL AV T++ +AFAE+ +L F+ETSALD+TNVE AF  +LT+IY+IVS++ +
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.244e-75
Identity = 131/177 (74.01%), Postives = 161/177 (90.96%), Query Frame = 3
Query:   96 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAV 626
            D+EYDYLFK+VLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATRS+++D K +KAQIWDTAGQERYRAITSAYYRGAVGALLVYD+ +H T++NV RWL+ELR+H D NI++ML+GNK+DLRHL AV T++ +AFAE+ +L F+ETSALD+TNVE AF  +LT+IY+IVS++ +
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 181          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_TOBAC2.275e-7867.45Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAA2A_ARATH6.618e-7865.89Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
YPT3_SCHPO2.515e-7770.05GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
RAA2C_ARATH2.515e-7766.20Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
YPTC6_CHLRE1.248e-7664.84Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11B_RAT4.015e-7574.01Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE4.015e-7574.01Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN4.015e-7574.01Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_BOVIN4.015e-7574.01Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]
RB11B_DISOM5.244e-7574.01Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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