CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 6.912e-43
Identity = 97/209 (46.41%), Postives = 128/209 (61.24%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRI--GCC 725
            YD LFKL+LIGDSGVGKS LL RF  + +     STIGV+F  +++ +D K +K QIWDTAGQER+  ITS+YYRGA G L+VYDVT   ++ NV +WL+E+  H   N+  +L+GNK+DL     V     K FA+   + F+ETSA +ATNVE AF  +  +I K +   A             S GE  N+K DS+ +K    GCC
Sbjct:    5 YDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAA------------SGGERPNLKIDSTPVKPAGGGCC 201          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.028e-43
Identity = 85/172 (49.42%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 620
            YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + FMETSA    NVENAF  +   I   + K+
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 176          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.028e-43
Identity = 85/172 (49.42%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 620
            YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + FMETSA    NVENAF  +   I   + K+
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 176          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.028e-43
Identity = 85/172 (49.42%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 620
            YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + FMETSA    NVENAF  +   I   + K+
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 176          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.028e-43
Identity = 85/172 (49.42%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 620
            YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + FMETSA    NVENAF  +   I   + K+
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK 176          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.028e-43
Identity = 85/172 (49.42%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 620
            YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + FMETSA    NVENAF  +   I   + K+
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKK 176          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.179e-42
Identity = 97/208 (46.63%), Postives = 128/208 (61.54%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCC 725
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R+  ++ K VK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +    +  +L+GNK+D+     V     K FA+  ++ F+ETSA D+TNVE AF  +  QI + +      A SN  +S     G+  NV   SS      CC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTF-ASSNAKSSV--KVGQGTNVSQSSS-----NCC 203          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.179e-42
Identity = 84/175 (48.00%), Postives = 117/175 (66.86%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 629
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G + VYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + F+ETSA  + NVE AF  +   I   ++K+  E
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNKKMNE 179          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.540e-42
Identity = 85/167 (50.90%), Postives = 116/167 (69.46%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            Y++LFK +++GDS VGKSNLL +F    F   S  TIGVEF +RS+ I++K +K QIWDTAGQE++R+IT AYYRGAV A++VYD+TR  +F+++  WL + R+ +  ++  +LIGNK DL     VST + K FAE+  L F ETSA  A NV+ AF +   QI K
Sbjct:   21 YEHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILK 187          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.627e-42
Identity = 83/167 (49.70%), Postives = 115/167 (68.86%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            YDYL KL+LIGDSGVGKS LL RF+++ F     +TIG++F  R++ ++ K +K QIWDTAGQER+R IT+AYYRGA+G LLVYDVT   +F N+  W+R + +H   ++  MLIGNK D+     V +  GK+ A++  + F+ETSA ++ NVE AF  +   I K
Sbjct:   12 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKK 178          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1C_HUMAN6.912e-4346.41Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB8A_PONAB9.028e-4349.42Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_MACFA9.028e-4349.42Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN9.028e-4349.42Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA9.028e-4349.42Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_BOVIN9.028e-4349.42Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
YPT1_SCHPO1.179e-4246.63GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB8_DISOM1.179e-4248.00Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB2B_DICDI1.540e-4250.90Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB8A_DICDI2.627e-4249.70Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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