CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.627e-42
Identity = 84/170 (49.41%), Postives = 120/170 (70.59%), Query Frame = 3
Query:   93 PDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 599
            PDE+YD+LFKLVL+GD+ VGK+ ++ RF    F+    STIGV+F  ++L I  K VK QIWDTAGQER+R IT +YYR A GA+L YD+T+ ++F +V  W+ ++R++   NI+ +LIGNK+DL  L  VS  + ++ AE  + L  +ETSA D++NVE AF  V T++
Sbjct:   11 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.431e-42
Identity = 94/208 (45.19%), Postives = 127/208 (61.06%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCC 725
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K VK QIWDTAGQER+R ITS+YYRGA G  +VYDVT   +F NV +WL+E+  +    +  +L+GNK+D+     V     K FA+   + F+ETSA +A+NVE AF  +  QI + +        +  + +  P  G    V ++SS     GCC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATNNTKASVNVSPGHG----VSNNSSG----GCC 203          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.431e-42
Identity = 91/211 (43.13%), Postives = 127/211 (60.19%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL-RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCST 731
            +YDYL KL+LIGDSGVGKS LL RF+   F     +TIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G LLVYDVT  ++F N+  W+R + +H   N+  +L+GNK D+     AV T  G+A A++  + F ETSA    NVE    EV   I + + +R  +  S    +T+    +T          ++  CC T
Sbjct:   11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVE----EVFFSIGRDIKQRLSDTDSRAEPATI-KISQTDQAAGAGQATQKSACCGT 216          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.643e-42
Identity = 87/178 (48.88%), Postives = 122/178 (68.54%), Query Frame = 3
Query:   78 MAGYKP---DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 599
            MAG  P   DE YD+LFKLVL+GD+ VGK+ ++ RF    F+    STIGV+F  ++L I  K VK QIWDTAGQER+R IT +YYR A GA+L YD+++ +TF +V  W+ ++R++   NI+ +LIGNK+DL  L  V   + ++ AE  + L  +ETSA D++NVE AFT V T++
Sbjct:    1 MAGPGPGDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADLREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATEL 178          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 7.643e-42
Identity = 86/166 (51.81%), Postives = 115/166 (69.28%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            +Y YLFKL+LIGDSGVGKS LL RF  + ++    STIGV+F  R++ ++ K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   TF+NV +WL+E+      N+  +L+GNK+DL     V     KAFA+   + F+ETSA  +TNVE AF  + T+I
Sbjct:    4 DYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEI 169          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.703e-41
Identity = 82/160 (51.25%), Postives = 109/160 (68.12%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            E YD+LFK ++IG +G GKS LL +F +N+F  +S  TIGVEF +R + +  K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNI+V+L GNK DL     V+  +   FA++  L F+ETSAL   NVE AF
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 162          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.703e-41
Identity = 82/160 (51.25%), Postives = 109/160 (68.12%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            E YD+LFK ++IG +G GKS LL +F +N+F  +S  TIGVEF +R + +  K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNI+V+L GNK DL     V+  +   FA++  L F+ETSAL   NVE AF
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 162          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.703e-41
Identity = 82/160 (51.25%), Postives = 109/160 (68.12%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            E YD+LFK ++IG +G GKS LL +F +N+F  +S  TIGVEF +R + +  K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNI+V+L GNK DL     V+  +   FA++  L F+ETSAL   NVE AF
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 162          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.703e-41
Identity = 82/160 (51.25%), Postives = 109/160 (68.12%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            E YD+LFK ++IG +G GKS LL +F +N+F  +S  TIGVEF +R + +  K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNI+V+L GNK DL     V+  +   FA++  L F+ETSAL   NVE AF
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 162          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.224e-41
Identity = 87/181 (48.07%), Postives = 122/181 (67.40%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSK-RAVEAGSNG 644
            YD L KL+LIGDSGVGKS LL RF +++F     +TIG++F  R++ I N+ VK Q+WDTAGQER+R IT+AYYRGA+G LLVYDVT   +F N+  W + ++ + +  + ++L+GNK DL     VSTE G+A A++  + F+E S+    NVE  F  V T+I   V+K +  E+GS G
Sbjct:    8 YDLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKTKGNESGSGG 188          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB43_HUMAN2.627e-4249.41Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
YPT1_NEUCR3.431e-4245.19GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
ARA3_ARATH3.431e-4243.13Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB43_RAT7.643e-4248.88Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB1A_DICDI7.643e-4251.81Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB4B_RAT1.703e-4151.25Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE1.703e-4151.25Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]
RAB4B_HUMAN1.703e-4151.25Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]
RAB4B_CANFA1.703e-4151.25Ras-related protein Rab-4B OS=Canis familiaris GN=... [more]
RYL1_YARLI2.224e-4148.07Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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