CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.224e-41
Identity = 86/178 (48.31%), Postives = 121/178 (67.98%), Query Frame = 3
Query:   78 MAGYKP---DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-ESLYFMETSALDATNVENAFTEVLTQI 599
            MAG  P   DE YD+LFKLVL+GD+ VGK+ ++ RF    F+    STIGV+F  ++L I  K VK QIWDTAGQER+R IT +YYR A GA+L YD+++ +TF +V  W+ ++R++   NI+ +LIGNK+DL     V   + ++ AE  + L  +ETSA D++NVE AFT V T++
Sbjct:    1 MAGPGPGDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADFREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATEL 178          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.904e-41
Identity = 83/167 (49.70%), Postives = 111/167 (66.47%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL-RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            +YDYL KL+LIGDSGVGKS LL RF+   F     +TIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G LLVYDVT  ++F N+  W+R + +H   N+  +L+GNK D+     AV T  G+A A++  + F ETSA    NVE  F  +   I
Sbjct:   11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.954e-41
Identity = 95/215 (44.19%), Postives = 129/215 (60.00%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPS-----KGETINVKDDSSVLKRIGCCST 731
            E+DYLFKL+LIGDS VGKS  L RF  + +     STIGV+F  R++ ++ K VK QIWDTAGQER+R ITS+YYRGA G ++VYD+T   +F NV +WL E+  + + ++  +L+GNK DL    AV T   +A+A++  + F+ETSA ++ NVE AF  +   I K       +AGS       PS     KG  I  +      K   CCST
Sbjct:    4 EFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKK------SKAGSQAALERKPSNVVQMKGRPIQQEQQ----KSSRCCST 208          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.470e-41
Identity = 82/167 (49.10%), Postives = 110/167 (65.87%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            E YD+LFK ++IG +G GKS LL +F +N+F  +S  TIGVEF +R + +  K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R    PNI+++L GNK DL     V+  +   FA++  L F+ETSAL   NVE AF +    I
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARSI 169          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.450e-41
Identity = 81/167 (48.50%), Postives = 113/167 (67.66%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            YD+L KL+LIGDSGVGKS LL RF+   F     +TIG++F  R++ ++ K +K QIWDTAGQER+R IT+AYYRGA+G LLVYDVT   +F ++  W+R + +H   ++  MLIGNK D+     V +  GK+ A++  + F+ETSA ++ NVE AF  +   I K
Sbjct:   12 YDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKK 178          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.450e-41
Identity = 86/188 (45.74%), Postives = 122/188 (64.89%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGR-WLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTL 659
            +EYDYLFK+++IGDSG GKS+LL RF  N ++    STIGV+F  ++++IDN  +K QIWDTAGQER+R ITS YYRGA G + VYDVT   +F ++   WL+++ ++   N+  +LIGNK DL     V  ++ K  AEQ ++ ++E SA   +NVE AF    T I K +  +  +  SN   ST+
Sbjct:    2 KEYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAF----TTIAKALKDKVTQYPSNAPTSTV 185          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.104e-40
Identity = 83/169 (49.11%), Postives = 112/169 (66.27%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            + YDYL KL+LIGDSGVGKS LL RF+++ F     +TIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G LL+YDVT   +F NV  W   + +H   N+  +LIGNK D      VS E G+A A++  + F+E SA    NV+ AF  +  +I K
Sbjct:    4 KSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKK 172          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.441e-40
Identity = 83/166 (50.00%), Postives = 112/166 (67.47%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            E+D+ FK++LIGDSGVGKS LL RF  + +     STIGV+F  ++L +D K +K QIWDTAGQER+R ITS+YYRGA G +LVYD T   +F NV +W+ E+  +   N+  +L+GNKTDL +   V +   K+FAE   + F+ETSA +ATNVE  F  +   I
Sbjct:    6 EHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDI 171          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.194e-40
Identity = 84/167 (50.30%), Postives = 110/167 (65.87%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL-RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            +YD L KL+L+GDSGVGKS LL RFT + F     +TIG++F  + + +D K+VK QIWDTAGQER+R ITSAYYRGA G +LVYD+T  A+F NV  W+R + +H   N+  +L+GNK DL      VS   G+A A++    F ETSA D  +VE AF  V   +
Sbjct:    9 DYDALIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDV 175          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.477e-40
Identity = 80/195 (41.03%), Postives = 129/195 (66.15%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETIN 683
            E+YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ I+ + VK QIWDTAGQER+R+IT +YYR A   +L YD+T   +F+ +  WLRE+ ++    +I +L+GNK DL     VS +  + F+E + +Y++ETSA ++ NVE  F ++     +++S+       N  +S LP +G++I+
Sbjct:    4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC---RLISEARQNTLVNNVSSPLPGEGKSIS 195          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB43_MOUSE2.224e-4148.31Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
RB1BV_BETVU2.904e-4149.70Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
YPTM1_MAIZE4.954e-4144.19GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB4B_DANRE6.470e-4149.10Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RAB8B_DICDI8.450e-4148.50Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB1_THEAN8.450e-4145.74Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
YPT2_SCHPO1.104e-4049.11GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB1D_DICDI1.441e-4050.00Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
YPTV2_VOLCA4.194e-4050.30GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RAB30_MOUSE5.477e-4041.03Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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