CX290269
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2) HSP 1 Score: 164.466 bits (415), Expect = 5.477e-40 Identity = 80/195 (41.03%), Postives = 129/195 (66.15%), Query Frame = 3 Query: 99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETIN 683 E+YD+LFK+VLIG++GVGK+ L+ RFT+ F +TIGV+F +++ I+ + VK QIWDTAGQER+R+IT +YYR A +L YD+T +F+ + WLRE+ ++ +I +L+GNK DL VS + + F+E + +Y++ETSA ++ NVE F ++ +++S+ N +S LP +G++I+ Sbjct: 4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC---RLISEARQNTLVNNVSSPLPGEGKSIS 195
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 5.477e-40 Identity = 80/195 (41.03%), Postives = 129/195 (66.15%), Query Frame = 3 Query: 99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETIN 683 E+YD+LFK+VLIG++GVGK+ L+ RFT+ F +TIGV+F +++ I+ + VK QIWDTAGQER+R+IT +YYR A +L YD+T +F+ + WLRE+ ++ +I +L+GNK DL VS + + F+E + +Y++ETSA ++ NVE F ++ +++S+ N +S LP +G++I+ Sbjct: 4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC---RLISEARQNTLVNNVSSPLPGEGKSIS 195
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 1.594e-39 Identity = 85/204 (41.67%), Postives = 124/204 (60.78%), Query Frame = 3 Query: 117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 728 FKLVL+G+S VGKS+L+ RF K +F+ +STIG F T+++ +D+ VK +IWDTAGQERY ++ YYRGA A++VYD+T TF W++EL+ PNI++ L GNK DL AV ++ +A+A+ SL FMETSA A NV F + ++ K + A A PS+ ++++++S R CCS Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGA---------PSRNRGVDLQENSPA-SRSQCCS 215
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB4A_DANRE (Ras-related protein Rab-4A OS=Danio rerio GN=rab4a PE=2 SV=2) HSP 1 Score: 162.155 bits (409), Expect = 2.718e-39 Identity = 80/167 (47.90%), Postives = 110/167 (65.87%), Query Frame = 3 Query: 99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599 E YD+LFK ++IG++G GKS LL +F + F +S TIGVEF ++ + + NK VK QIWDTAGQER+R++T +YYRGA GALLVYD+T T+ + WL + R NI+++L GNK DL V+ + FA++ L F+ETSAL NVE AF + +I Sbjct: 3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKRFKDDSNHTIGVEFGSKIISVVNKFVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 169
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2) HSP 1 Score: 162.155 bits (409), Expect = 2.718e-39 Identity = 74/165 (44.85%), Postives = 112/165 (67.88%), Query Frame = 3 Query: 105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599 YD+LFKL+LIGDSGVGK+ L+ RF ++ FN STIG++F R++ I+ K +K Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T +F+N+ W++ ++E+ + +L+GNK D+ V E + A + + F ETSA + NV+ AF+ + I Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDI 169
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.550e-39 Identity = 77/184 (41.85%), Postives = 120/184 (65.22%), Query Frame = 3 Query: 105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTAST 656 YD+LFKL+LIGDSGVGK+ L+ RF ++ FN STIG++F R++ I+ K +K Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T +F+N+ W++ ++E+ + +L+GNK D+ V E + A + + F ETSA + NV+ AF+ + I ++ +G+N S+ Sbjct: 5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDI--LLKTGGRRSGTNSKPSS 186
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 4.637e-39 Identity = 84/204 (41.18%), Postives = 123/204 (60.29%), Query Frame = 3 Query: 117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 728 FKLVL+G+S VGKS+L+ RF K +F+ +STIG F T+++ +D+ VK +IWDTAGQERY ++ YYRGA A++VYD+T TF W++EL+ PNI++ L GNK DL AV ++ +A+AE SL FMETSA A NV F + ++ K + A A P + +++++++ R CCS Sbjct: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGA---------PGRNRGVDLQENNPA-SRSQCCS 215
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2) HSP 1 Score: 161.384 bits (407), Expect = 4.637e-39 Identity = 79/167 (47.31%), Postives = 110/167 (65.87%), Query Frame = 3 Query: 99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599 E YD+LFK ++IG++G GKS LL +F + +F +S TIGVEF ++ + + K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T T+ + WL + R NI+++L GNK DL V+ + FA++ L F+ETSAL NVE AF + +I Sbjct: 3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 169
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2) HSP 1 Score: 161.384 bits (407), Expect = 4.637e-39 Identity = 79/167 (47.31%), Postives = 110/167 (65.87%), Query Frame = 3 Query: 99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599 E YD+LFK ++IG++G GKS LL +F + +F +S TIGVEF ++ + + K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T T+ + WL + R NI+++L GNK DL V+ + FA++ L F+ETSAL NVE AF + +I Sbjct: 3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 169
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 4.637e-39 Identity = 77/174 (44.25%), Postives = 117/174 (67.24%), Query Frame = 3 Query: 84 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605 G + EYD L K+++IGDSGVGKS +L RF N F STIGV+F R++ +D K +K QIWDTAGQER++ IT++YYRGA G ++VYD+T +F ++ RWL ++ P+++ +++GNK DL AV + K FA++ ++ METSA ++T ++ AF ++ + I K Sbjct: 23 GSESHPEYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIKK 196 The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bpback to top |