CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.477e-40
Identity = 80/195 (41.03%), Postives = 129/195 (66.15%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETIN 683
            E+YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ I+ + VK QIWDTAGQER+R+IT +YYR A   +L YD+T   +F+ +  WLRE+ ++    +I +L+GNK DL     VS +  + F+E + +Y++ETSA ++ NVE  F ++     +++S+       N  +S LP +G++I+
Sbjct:    4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC---RLISEARQNTLVNNVSSPLPGEGKSIS 195          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.477e-40
Identity = 80/195 (41.03%), Postives = 129/195 (66.15%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETIN 683
            E+YD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ I+ + VK QIWDTAGQER+R+IT +YYR A   +L YD+T   +F+ +  WLRE+ ++    +I +L+GNK DL     VS +  + F+E + +Y++ETSA ++ NVE  F ++     +++S+       N  +S LP +G++I+
Sbjct:    4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC---RLISEARQNTLVNNVSSPLPGEGKSIS 195          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.594e-39
Identity = 85/204 (41.67%), Postives = 124/204 (60.78%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 728
            FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W++EL+    PNI++ L GNK DL    AV  ++ +A+A+  SL FMETSA  A NV   F  +  ++ K   + A  A         PS+   ++++++S    R  CCS
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGA---------PSRNRGVDLQENSPA-SRSQCCS 215          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB4A_DANRE (Ras-related protein Rab-4A OS=Danio rerio GN=rab4a PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.718e-39
Identity = 80/167 (47.90%), Postives = 110/167 (65.87%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            E YD+LFK ++IG++G GKS LL +F +  F  +S  TIGVEF ++ + + NK VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NI+++L GNK DL     V+  +   FA++  L F+ETSAL   NVE AF +   +I
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKRFKDDSNHTIGVEFGSKIISVVNKFVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 169          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.718e-39
Identity = 74/165 (44.85%), Postives = 112/165 (67.88%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            YD+LFKL+LIGDSGVGK+ L+ RF ++ FN    STIG++F  R++ I+ K +K Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +F+N+  W++ ++E+    +  +L+GNK D+     V  E  +  A +  + F ETSA  + NV+ AF+ +   I
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDI 169          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.550e-39
Identity = 77/184 (41.85%), Postives = 120/184 (65.22%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTAST 656
            YD+LFKL+LIGDSGVGK+ L+ RF ++ FN    STIG++F  R++ I+ K +K Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +F+N+  W++ ++E+    +  +L+GNK D+     V  E  +  A +  + F ETSA  + NV+ AF+ +   I  ++      +G+N   S+
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDI--LLKTGGRRSGTNSKPSS 186          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.637e-39
Identity = 84/204 (41.18%), Postives = 123/204 (60.29%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 728
            FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W++EL+    PNI++ L GNK DL    AV  ++ +A+AE  SL FMETSA  A NV   F  +  ++ K   + A  A         P +   +++++++    R  CCS
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGA---------PGRNRGVDLQENNPA-SRSQCCS 215          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.637e-39
Identity = 79/167 (47.31%), Postives = 110/167 (65.87%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            E YD+LFK ++IG++G GKS LL +F + +F  +S  TIGVEF ++ + +  K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NI+++L GNK DL     V+  +   FA++  L F+ETSAL   NVE AF +   +I
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 169          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.637e-39
Identity = 79/167 (47.31%), Postives = 110/167 (65.87%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            E YD+LFK ++IG++G GKS LL +F + +F  +S  TIGVEF ++ + +  K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NI+++L GNK DL     V+  +   FA++  L F+ETSAL   NVE AF +   +I
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 169          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.637e-39
Identity = 77/174 (44.25%), Postives = 117/174 (67.24%), Query Frame = 3
Query:   84 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            G +   EYD L K+++IGDSGVGKS +L RF  N F     STIGV+F  R++ +D K +K QIWDTAGQER++ IT++YYRGA G ++VYD+T   +F ++ RWL ++     P+++ +++GNK DL    AV  +  K FA++ ++  METSA ++T ++ AF ++ + I K
Sbjct:   23 GSESHPEYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIKK 196          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB30_HUMAN5.477e-4041.03Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN5.477e-4041.03Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
RAB5C_CANFA1.594e-3941.67Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RAB4A_DANRE2.718e-3947.90Ras-related protein Rab-4A OS=Danio rerio GN=rab4a... [more]
RAB13_RAT2.718e-3944.85Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB13_MOUSE3.550e-3941.85Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB5C_BOVIN4.637e-3941.18Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB4A_HUMAN4.637e-3947.31Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RAB4A_BOVIN4.637e-3947.31Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RAB1C_DICDI4.637e-3944.25Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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