CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 6.056e-39
Identity = 79/167 (47.31%), Postives = 110/167 (65.87%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            E YD+LFK ++IG++G GKS LL +F + +F  +S  TIGVEF ++ + +  K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NI+++L GNK DL     V+  +   FA++  L F+ETSAL   NVE AF +   +I
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKI 169          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.056e-39
Identity = 80/175 (45.71%), Postives = 115/175 (65.71%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 629
            YD LFKL+LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ +  K +K QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +F+N+ +WLR + EH + ++  ML+GNK D+     V    G+  A + ++ F ETSA    N+E AF   LT    I+ K  V+
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAF---LTLAEDILQKTPVK 177          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RHA1_ARATH (Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.909e-39
Identity = 78/182 (42.86%), Postives = 121/182 (66.48%), Query Frame = 3
Query:  120 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPS 665
            KLVL+GD G GKS+L+ RF K++F    +STIG  F +++L +++  VK +IWDTAGQERY ++   YYRGA  A++V+D+T  A+F+   +W++EL+   +PN+++ L GNK DL     VS E+ + +A++ SL+FMETSA  ATNV++ F E+  ++ +      V+   N T   LP+
Sbjct:   12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPR------VQPAENPTGMVLPN 187          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.909e-39
Identity = 74/165 (44.85%), Postives = 111/165 (67.27%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            YD+LFKL+LIGDSGVGK+ L+ RF ++ FN    STIG++F  R++ I+ K +K Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +F+N+  W++ ++E+    +  +L+GNK D+     V  E     A +  + F ETSA  + NV+ AF+ +   I
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.909e-39
Identity = 74/165 (44.85%), Postives = 111/165 (67.27%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            YD+LFKL+LIGDSGVGK+ L+ RF ++ FN    STIG++F  R++ I+ K +K Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +F+N+  W++ ++E+    +  +L+GNK D+     V  E     A +  + F ETSA  + NV+ AF+ +   I
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.033e-38
Identity = 83/209 (39.71%), Postives = 128/209 (61.24%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCC 725
            + YD + K++LIGDSGVGKS LL RF +++FN    +TIG++F  +++ I+ K VK Q+WDTAGQER+R IT+AYYRGA+G +LVYDVT   TF N+ +W + + EH +    ++L+GNK+D+   V V+ + G+A A++  + F+E+SA +  NV   F  +   I + +    +    NG       K   I++   S    +  CC
Sbjct:   15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNG-------KEGNISINSGSGNSSKSNCC 215          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.033e-38
Identity = 83/196 (42.35%), Postives = 128/196 (65.31%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAV---EAGSNGTASTLPSKGET 677
            + YD + K++LIGDSGVGKS LL RF +++FN    +TIG++F  +++ I+ K VK Q+WDTAGQER+R IT+AYYRGA+G +LVYDVT   TF N+ +W + + EH +    ++L+GNK+D+   V V+ E G+A A++  L F+E+SA +  NV   F  +   I + +    +    +G +G  S   +KG++
Sbjct:   15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSDMDTRV-VTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTLARLIQEKIDSNKLSGPNSGKDGNISINANKGDS 209          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.033e-38
Identity = 83/204 (40.69%), Postives = 123/204 (60.29%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 728
            FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W++EL+    PNI++ L GNK DL    AV  ++ +A+A+  SL FMETSA  A NV   F  +  ++ K   + A  A         P +   +++++++    R  CCS
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGA---------PGRNRGVDLQENNPA-SRSQCCS 215          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.033e-38
Identity = 83/204 (40.69%), Postives = 123/204 (60.29%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 728
            FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W++EL+    PNI++ L GNK DL    AV  ++ +A+A+  SL FMETSA  A NV   F  +  ++ K   + A  A         P +   +++++++    R  CCS
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGA---------PGRNRGVDLQENNPA-SRSQCCS 215          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.349e-38
Identity = 84/204 (41.18%), Postives = 123/204 (60.29%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 728
            FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W++EL+    PNI++ L GNK DL    AV  ++ +A+A+  SL FMETSA  A NV   F  +  ++ K   + A  A         P +   ++++ +S+   R  CCS
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGA---------PGRTRGVDLQ-ESNPASRSQCCS 215          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB4A_RAT6.056e-3947.31Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]
RAB10_DISOM6.056e-3945.71Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RHA1_ARATH7.909e-3942.86Ras-related protein RHA1 OS=Arabidopsis thaliana G... [more]
RAB13_HUMAN7.909e-3944.85Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN7.909e-3944.85Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
SEC4_YEAST1.033e-3839.71Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
SEC4_CANGA1.033e-3842.35Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
RAB5C_PONAB1.033e-3840.69Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5... [more]
RAB5C_HUMAN1.033e-3840.69Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5... [more]
RAB5C_MOUSE1.349e-3841.18Ras-related protein Rab-5C OS=Mus musculus GN=Rab5... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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