CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.005e-38
Identity = 75/167 (44.91%), Postives = 109/167 (65.27%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            YD LFKL+LIGDSGVGK+ +L RF+ + FN    STIG++   +++ +  K +K QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +F+N+ +WLR + EH + ++  ML+GNK D+     V    G+  A +  + F ETSA    N+E AF  +   I +
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILR 172          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 5.126e-38
Identity = 76/162 (46.91%), Postives = 109/162 (67.28%), Query Frame = 3
Query:   96 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 578
            DE  DYLFK++LIGDS VGK+ ++  F    ++   ++TIGV+F  RSL ID K VK Q+WDTAGQER+R IT +YYR A  A++ YD+TR +TF++V  W+ E+ ++   N+++MLIGNK+DL     V  ED    AE+  L   +ETSA ++ N++  F
Sbjct:   11 DENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKHGLLAVLETSAKESRNIDEVF 172          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.126e-38
Identity = 76/162 (46.91%), Postives = 108/162 (66.67%), Query Frame = 3
Query:   96 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSALDATNVENAF 578
            DE +DYLFK++LIGDS VGK+ ++  F    +    ++TIGV+F  RSL ID K VK Q+WDTAGQER+R IT +YYR A  A++ YD+TR +TF+++  W+ E+ ++   N+++MLIGNK DL     V  ED    AE+  L   +ETSA ++ N+E  F
Sbjct:   11 DENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVF 172          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RB39B_MOUSE (Ras-related protein Rab-39B OS=Mus musculus GN=Rab39b PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.695e-38
Identity = 83/185 (44.86%), Postives = 119/185 (64.32%), Query Frame = 3
Query:  111 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR--AVEAGSNGTAS 653
            Y F+L++IGDS VGKS L+ RFT+  F   S  T+GV+F +R + I+  K +K QIWDTAGQER+R+IT AYYR +VG LL++D+T   +FQNV  WL E + H  P  I+ +L+G+K DL     V+  + +  A    + ++ETSA DA NVE AFT++   IY++V +    ++ G  G  S
Sbjct:    7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEITIQEGWEGVKS 191          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RB39B_HUMAN (Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.695e-38
Identity = 83/185 (44.86%), Postives = 119/185 (64.32%), Query Frame = 3
Query:  111 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR--AVEAGSNGTAS 653
            Y F+L++IGDS VGKS L+ RFT+  F   S  T+GV+F +R + I+  K +K QIWDTAGQER+R+IT AYYR +VG LL++D+T   +FQNV  WL E + H  P  I+ +L+G+K DL     V+  + +  A    + ++ETSA DA NVE AFT++   IY++V +    ++ G  G  S
Sbjct:    7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEITIQEGWEGVKS 191          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RB39B_BOVIN (Ras-related protein Rab-39B OS=Bos taurus GN=RAB39B PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.695e-38
Identity = 83/185 (44.86%), Postives = 119/185 (64.32%), Query Frame = 3
Query:  111 YLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRID-NKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR--AVEAGSNGTAS 653
            Y F+L++IGDS VGKS L+ RFT+  F   S  T+GV+F +R + I+  K +K QIWDTAGQER+R+IT AYYR +VG LL++D+T   +FQNV  WL E + H  P  I+ +L+G+K DL     V+  + +  A    + ++ETSA DA NVE AFT++   IY++V +    ++ G  G  S
Sbjct:    7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGDITIQEGWEGVKS 191          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.695e-38
Identity = 81/193 (41.97%), Postives = 122/193 (63.21%), Query Frame = 3
Query:  108 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINV 686
            +Y  K ++ G   VGKS+LL +F + EF+ E  +TIGVEF TRS+ ID+  +K +IWDTAGQE +R+IT+ YYRGA  ALL YD+T+  +FQ +  W+ E+R+ + PNI++ LIGNK D +    ++TE+G   A++  + F ETSA D  +VE+ F          VSK+ +     GT + +  K ++I +
Sbjct:    3 EYHLKCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLSGWMDEVRQMSSPNIVIALIGNKCDCKDKRVITTEEGAKNAKENDILFFETSAKDYESVESVFDG--------VSKKVLSLIKQGTLTVVNKKPQSIQL 187          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.695e-38
Identity = 76/163 (46.63%), Postives = 108/163 (66.26%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+S+ +D+  VK +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W++EL+    P+I++ L GNK DL +   V  E+ +A+A+  SL FMETSA  A NV + F  +  ++ K
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 183          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.695e-38
Identity = 76/163 (46.63%), Postives = 108/163 (66.26%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+S+ +D+  VK +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W++EL+    P+I++ L GNK DL +   V  E+ +A+A+  SL FMETSA  A NV + F  +  ++ K
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 183          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.695e-38
Identity = 76/163 (46.63%), Postives = 108/163 (66.26%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+S+ +D+  VK +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W++EL+    P+I++ L GNK DL +   V  E+ +A+A+  SL FMETSA  A NV + F  +  ++ K
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPK 183          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB10_CHICK3.005e-3844.91Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RAB19_MOUSE5.126e-3846.91Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]
RAB19_HUMAN5.126e-3846.91Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
RB39B_MOUSE6.695e-3844.86Ras-related protein Rab-39B OS=Mus musculus GN=Rab... [more]
RB39B_HUMAN6.695e-3844.86Ras-related protein Rab-39B OS=Homo sapiens GN=RAB... [more]
RB39B_BOVIN6.695e-3844.86Ras-related protein Rab-39B OS=Bos taurus GN=RAB39... [more]
RABQ_DICDI6.695e-3841.97Ras-related protein RabQ OS=Dictyostelium discoide... [more]
RAB5B_PONAB6.695e-3846.63Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE6.695e-3846.63Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]
RAB5B_HUMAN6.695e-3846.63Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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