CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.668e-37
Identity = 73/163 (44.79%), Postives = 108/163 (66.26%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQERY ++   YYRGA  A++VYD+T   +F     W++EL+    PNI++ L GNK DL +  AV  ++ +++A+  SL FMETSA  + NV   F  +  ++ K
Sbjct:   21 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 183          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 5.668e-37
Identity = 78/166 (46.99%), Postives = 108/166 (65.06%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            YD  FK++L+GDSGVGK+ LL RF    F   +  ST+G++F  + L +D   VK Q+WDTAGQER+R++T AYYR A   LL+YDVT  A+F N+  WL E+ E+   ++ +ML+GNK D  H   V  EDG+  A++  L FMETSA    NV+ AFT +  ++
Sbjct:   60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 225          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB4A_ECHMU (Probable Ras-related protein Rab-4A OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.402e-37
Identity = 73/162 (45.06%), Postives = 108/162 (66.67%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTE-DGKAFAEQESLYFMETSALDATNVENAFT 581
            + +DYLFK ++IG++G GK+ +L R+T+ +F   ++ TIG EF +R + +D   VK QIWDTAGQER+R++  +YY  AVG LLVYD+T   +F  V +WL + R    P ++V+L+GNK DLR      T  +   FA++  L F+ETSAL   N+++AFT
Sbjct:    4 DRFDYLFKFLIIGNAGTGKTCILRRYTERKFFPNTQHTIGAEFGSRVISVDGTHVKIQIWDTAGQERFRSMARSYYHDAVGTLLVYDITNRTSFGAVEQWLGDARHLATPGVVVILVGNKKDLRDTDGQVTHWEANTFAQENGLQFIETSALTGENIDDAFT 165          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.263e-36
Identity = 78/176 (44.32%), Postives = 112/176 (63.64%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 629
            YD  FK++L+GDSGVGK+ LL RF    F   +  ST+G++F  + L +D   VK QIWDTAGQER+R++T AYYR A   LL+YD+T   +F N+  WL E++E+   ++++ML+GNK D      V  EDG+  A++  L FMETSA    NV+ AFT +  ++ +  +K   E
Sbjct:   61 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQRSTKAPSE 236          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.649e-36
Identity = 72/160 (45.00%), Postives = 106/160 (66.25%), Query Frame = 3
Query:  120 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            KLVL+GD G GKS+L+ RF K +F    +STIG  F + +L ++N  VK +IWDTAGQERY ++   YYRGA  A++VYD+T   +F    +W++EL++  +PN+++ L GNK DL     V+ E+ + +AE+  L+FMETSA  A NV   F E+  ++
Sbjct:   12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRL 171          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RB22A_HUMAN (Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.649e-36
Identity = 79/202 (39.11%), Postives = 119/202 (58.91%), Query Frame = 3
Query:  120 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCC 725
            K+ L+GD+GVGKS+++ RF ++ F+     TIG  F T++++  N++ K  IWDTAGQER+RA+   YYRG+  A++VYD+T+  TF  +  W++ELR+H  PNI+V + GNK DL  +  V   D K +A+     F+ETSA +A N+   F E+  +I               T + LPS G+   ++   S  KR  CC
Sbjct:    7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI-------------PSTDANLPSGGKGFKLRRQPSEPKR-SCC 194          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RABA_DICDI (Ras-related protein RabA OS=Dictyostelium discoideum GN=rabA PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.649e-36
Identity = 76/186 (40.86%), Postives = 119/186 (63.98%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTAST 656
            ++Y++LFK + +GDSGVGKS++L RFT++ F     STIGV+F  +++ I+ K +K QIWDTAGQER+R   ++ YRG    ++VYDVT   +F+NV +W++E+  +   N+I M+IGNK+D+     V     + FA+   + F ETSA  A N+E+AF  ++    K+   R  E   + T+S+
Sbjct:    3 KKYEHLFKFIFVGDSGVGKSSILLRFTEDTFTESYISTIGVDFKIKTVYIEGKAIKLQIWDTAGQERFRVHNNSQYRGCHAVMVVYDVTDQRSFENVAKWIQEIERYARDNVIKMIIGNKSDMISQKVVDPFLAQEFADSLDITFKETSAKQAINIEDAFISLV----KLCIDRIEEFKPSSTSSS 184          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.649e-36
Identity = 77/166 (46.39%), Postives = 108/166 (65.06%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            YD  FK++L+GDSGVGK+ LL RF    F   +  ST+G++F  + + +D   VK QIWDTAGQER+R++T AYYR A   LL+YDVT  A+F ++  WL E++EH   ++++ML+GNK D     AV  ED +  A+   L FMETSA    NV+ AFT +  ++
Sbjct:   60 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKEL 225          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB5_TOBAC (Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.154e-36
Identity = 71/160 (44.38%), Postives = 107/160 (66.88%), Query Frame = 3
Query:  120 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            KLVL+GD G GKS+L+ RF K +F    +STIG  F + ++ ++N  VK +IWDTAGQERY ++   YYRGA  A++VYD+T   +     +W++EL++  +PN+++ L GNK DL     V+ E+ + +AE+  L+FMETSA  ATNV + F E+  ++
Sbjct:   12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRL 171          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.154e-36
Identity = 78/176 (44.32%), Postives = 112/176 (63.64%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESK-STIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 629
            YD  FK++L+GDSGVGK+ LL RF    F   +  ST+G++F  + L +D   VK QIWDTAGQER+R++T AYYR A   LL+YD+T   +F N+  WL E++E+   ++++ML+GNK D      V  EDG+  A++  L FMETSA    NV+ AFT +  ++ +  +K   E
Sbjct:   64 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAKAPSE 239          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5A_CANFA5.668e-3744.79Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB26_HUMAN5.668e-3746.99Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]
RAB4A_ECHMU7.402e-3745.06Probable Ras-related protein Rab-4A OS=Echinococcu... [more]
RAB26_RAT1.263e-3644.32Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RHN1_NICPL1.649e-3645.00Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
RB22A_HUMAN1.649e-3639.11Ras-related protein Rab-22A OS=Homo sapiens GN=RAB... [more]
RABA_DICDI1.649e-3640.86Ras-related protein RabA OS=Dictyostelium discoide... [more]
RAB26_BOVIN1.649e-3646.39Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RAB5_TOBAC2.154e-3644.38Ras-related protein Rab5 OS=Nicotiana tabacum GN=R... [more]
RAB26_MOUSE2.154e-3644.32Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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