CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:171..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.478e-69
Identity = 132/210 (62.86%), Postives = 168/210 (80.00%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSS-VLKRIGCC 725
            EEYDYL+K+VLIGDSGVGKSNLLSRFT+NEF+LE+KSTIGVEFATR+++ + K +KAQ+WDTAGQERYRAITSAYYRGAVGALLVYD+ + AT+++V RW+ ELRE+ D NI +ML+GNK+DLRHL  VST++ K F+E+  L F+ETSALD++NVE AF  +LTQIY I+S+    + S G  +T+ S  ETI +   S     + GCC
Sbjct:    8 EEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSR---PSHSTGPQTTIDSNTETIILPTTSEPPAAKSGCC 214          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 257.299 bits (656), Expect = 6.209e-68
Identity = 133/214 (62.15%), Postives = 166/214 (77.57%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAV----EAGSNGTASTLPSKGETINVK-DDSSVLKRIGCC 725
            ++ DY+FK+VLIGDS VGKS LL+RF +NEFNL+SK+TIGVEF TR+L ID + VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  +F +V RWL ELR H D NI++MLIGNK+DL  L  V TED K FAE+E+L+FMETSAL++TNVENAF  VLT+IY+IVSK+ +    E  S+G +S L  KG  I V   + +   +  CC
Sbjct:   13 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSGNSSLL--KGTKIVVPGQEPAPPTKASCC 224          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.864e-67
Identity = 128/209 (61.24%), Postives = 162/209 (77.51%), Query Frame = 3
Query:  108 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAV---EAGSNGTASTLPSKGETINVKDDSSVLKRIGCC 725
            DY+FK+VLIGDS VGKS +L+RF +NEF+L+SKSTIGVEF TR+L ID+K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF ++ RWL ELR H D NI+++LIGNK DL +   V TED K FAE+E L+F+ETSAL+ATNVE+AFT VLT+IY IV+K+++   E+  NG +++L  +   I         KR  CC
Sbjct:   15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADESQGNGNSASLSGQKIIIPGPAQEIPAKRNMCC 223          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.590e-66
Identity = 127/215 (59.07%), Postives = 167/215 (77.67%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAG---SNGTASTLPSKGETINVKDDSSVL-KRIGCCST 731
            ++ DY+FK+VLIGDS VGKS +L+RF +NEF+L+SK+TIGVEF TR+L I +K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF ++ RWL ELR H D NI++MLIGNKTDL    AV TED K FA++E L+F+ETSA++ATN+E+AF  VLT+I+ IV+K+ + A    SNG  ++L   G+ I V     V+ ++  CCS+
Sbjct:   10 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNGNPASL--TGKKILVPGPGQVIPEKKACCSS 222          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 249.21 bits (635), Expect = 1.691e-65
Identity = 126/215 (58.60%), Postives = 164/215 (76.28%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE---AGSNGTASTLPSKGETINV----KDDSSVLKRIGCC 725
            +YDYLFK+VLIGDSGVGKSNLLSRFT +EFN+ESKSTIGVEFATR++ ++NK +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+++ ++++N   WL ELRE+ D N+ V LIGNK+DL HL AV T++ K FA +  + F ETSAL++ NV+ AF E++  I+++VSK  V+   +G+N   S    KG TI++    K+D    K   CC
Sbjct:    9 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLSGSGTNNMGSNGAPKGPTISLTPAPKEDKK-KKSSNCC 222          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 248.44 bits (633), Expect = 2.884e-65
Identity = 128/215 (59.53%), Postives = 163/215 (75.81%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAG---SNGTASTLPS-KGETINVKDDSSVLKRI---GCC 725
            +YD LFK+VLIGDSGVGKSNLLSRFTKNEFN++SKSTIGVEFATR+L ID K +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+++ ++++N   WL ELRE+ D N+ V LIGNK+DL HL AV TE+ K FA++  L F ETSAL++ NV+ AF E++  IY+ VSK  ++ G   +NG A+   +  G TI++    +  K+     CC
Sbjct:    9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 123/213 (57.75%), Postives = 162/213 (76.06%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPS-KGETINVKDDSSVLK-RIGCCST 731
            ++ DY+FK+VLIGDS VGK+ +L+RF +NEF+L+SK+TIGVEF TR+L I +K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF ++ RWL ELR H D NI++ML GNKTDL    AV TED K FA++E L+F+ETSA++AT +E+AF  VLT+I+ IV+K+ + A  N + S   S  G+ I V     V+  +  CCS+
Sbjct:   10 QKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADENQSNSNPASLTGKKILVPGPGQVIPGKKACCSS 222          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 121/207 (58.45%), Postives = 155/207 (74.88%), Query Frame = 3
Query:  108 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 728
            +YLFK+V+IGDS VGKSNLL+R+ +NEFN  SK+TIGVEF T+S+ ID K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR +TF+NVGRWL EL  H+D  +  MLIGNK DL  + AVS E+GK+ AE E L+FMETSALD+TNV+ AF  V+ +IY  +S++ + + S     T+        VK+++   K   CCS
Sbjct:   10 EYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNSDSYKEELTV---NRVSLVKNENEGTKTFSCCS 213          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.026e-62
Identity = 121/211 (57.35%), Postives = 159/211 (75.36%), Query Frame = 3
Query:  108 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKR---IGCCST 731
            +YLFK+V+IGDS VGKSNLLSR+ +NEF+  SK+TIGVEF T+S+ I+ K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR  TF++VGRWL EL+ H+D  +  ML+GNK DL ++ AVS E+GKA AE+E L+F+ETSALD+TNV+ AF  V+  IY  VS++ + + +     T+        VKDD+S  K+     CCS+
Sbjct:   10 EYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNSDTYKDELTV---NRVSLVKDDNSASKQSSGFSCCSS 217          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 6.880e-59
Identity = 118/215 (54.88%), Postives = 155/215 (72.09%), Query Frame = 3
Query:   84 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 728
            G + DE+Y+++FK+VLIG+SGVGK+NLLSRFT+NEF+ +S++TIGVEF+TR++ +    VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  V RWL+EL +H +  I+VML+GNK+DL     V TE+   FAE   L F+ETSALD+TNVE AF  VL +I+  VSK+      N T ++  + G     +D     KR  C S
Sbjct:    2 GNRTDEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQK----QNSTRTSAITLGNAQAGQDPGPGEKRACCIS 212          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_DICDI1.478e-6962.86Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RGP1_ORYSJ6.209e-6862.15Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11A_LOTJA6.864e-6761.24Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11D_TOBAC7.590e-6659.07Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
YPT32_YEAST1.691e-6558.60GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
YPT31_YEAST2.884e-6559.53GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RB11C_TOBAC7.104e-6457.75Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
ARA4_ARATH1.583e-6358.45Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
ARA1_ARATH1.026e-6257.35Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RAB25_MOUSE6.880e-5954.88Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
back to top