CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RASD_DICDI (Ras-like protein rasD OS=Dictyostelium discoideum GN=rasD PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 58/164 (35.37%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID++     I DTAGQE Y A+   Y R   G L VY +T  +++  +  +  + LR      + ++L+GNK DL H   VS  +G+  A+  +  FME+SA    NVE AF  ++ +I K
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVSIDDETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSYDEIASFREQILRVKDKDRVPLILVGNKADLDHERQVSVNEGQELAKGFNCPFMESSAKSRINVEEAFYSLVREIRK 166          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 56/163 (34.36%), Postives = 86/163 (52.76%), Query Frame = 3
Query:   96 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            + E    FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R + A S      F  +++L + + SA    N E  F
Sbjct:    3 ENEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 160          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RASM_HUMAN (Ras-related protein M-Ras OS=Homo sapiens GN=MRAS PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.081e-19
Identity = 60/171 (35.09%), Postives = 98/171 (57.31%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLR-ELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALD-ATNVENAFTEVLTQIYKIVSKRA 623
            +KLV++GD GVGKS L  +F +  F  +   TI   +   +  IDN+     + DTAGQE + A+   Y R   G L+VY VT  A+F++V R+ +  LR     +  ++L+ NK DL HL  ++ E GK  A + ++ ++ETSA D   NV+ AF +++  I + + +++
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKITREQGKEMATKHNIPYIETSAKDPPLNVDKAFHDLVRVIRQQIPEKS 183          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.081e-19
Identity = 55/156 (35.26%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R + A S      F  +++L + + SA    N E  F
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 160          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RASC_DICDI (Ras-like protein rasC OS=Dictyostelium discoideum GN=rasC PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 61/164 (37.20%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  114 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHL-VAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            L KLV++GD GVGKS L  + T+N+F  E   TI   +  + + ID +V    I DTAGQE Y A+   Y R   G L+VY +   A+F+ V  +  ++    D +   +++IGNK DL      V   +GK  A+     F+ETSA    NVE AF  ++ +I
Sbjct:    4 LLKLVIVGDGGVGKSALTIQLTQNQFIAEYDPTIENSYR-KQVNIDEEVYMLDILDTAGQEEYSAMRDQYIRSGRGFLIVYSIISRASFEAVTTFREQILRVKDLSTYPIVIIGNKADLPDKDRKVPPMEGKELAKSFGAPFLETSAKSRVNVEEAFFTLVREI 166          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAS1_PHYPO (Ras-like protein 1 OS=Physarum polycephalum GN=RAS1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 61/182 (33.52%), Postives = 90/182 (49.45%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVML-IGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTL 659
            +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE Y A+   Y R   G L VY +T  ++F  +  +  ++    D + + M+ +GNK DL     V+T +G+  A      FMETSA    NVE +F +++ +I K         G  G   TL
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDKVPMIVVGNKCDLEGERQVTTGEGQDLARSFGCPFMETSAKSRVNVEESFYQLVREIRKDSRTDTKGPGGKGGKKTL 184          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAS1_CANAL (Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 63/170 (37.06%), Postives = 90/170 (52.94%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRA 623
            +KLV++G  GVGKS L  +  ++ F  E   TI   +  +   ID++ V   + DTAGQE Y A+   Y R   G LLVY +    +FQ +  +  + LR     N+ V+++GNK DL     VS EDG A A   +  F+ETSA    NVE AF  ++  I +  +K A
Sbjct:    5 YKLVVVGGGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KQCTIDDQQVLLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSINSLNSFQELNSFYDQILRVKDSDNVPVLVVGNKCDLEMERQVSYEDGLALANSFNCPFLETSAKQRINVEEAFYGLVRNINQYNAKIA 173          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAN_CARAU (GTP-binding nuclear protein Ran OS=Carassius auratus GN=ran PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 56/163 (34.36%), Postives = 86/163 (52.76%), Query Frame = 3
Query:   96 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            + E    FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R + A S      F  +++L + + SA    N E  F
Sbjct:    3 ENEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 160          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 52/161 (32.30%), Postives = 84/161 (52.17%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            FKL+++GD G GK+  L R    EF   ++ T+GV+        +   ++ + WDTAGQE+Y  +  AYY     A++++DVT   T+ N+ RW R+LR     NI ++L GNK D+            ++  ++ L + E SA +  N E  F  +  +I
Sbjct:   14 FKLLIVGDGGTGKTTFLKRHLTGEFEHNTEPTLGVDIYPLDFFTNRGKIRFECWDTAGQEKYSGLKDAYYIHGQCAIIMFDVTARHTYMNIDRWYRDLR-RVCKNIPIVLCGNKVDVPSRQIKPKH--VSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRI 171          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB28_MOUSE (Ras-related protein Rab-28 OS=Mus musculus GN=Rab28 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 55/180 (30.56%), Postives = 91/180 (50.56%), Query Frame = 3
Query:   96 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV-VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRW---LRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRA 623
            +E  D   K+V++GD   GK++L + F +  F  + K TIG++F  R + +   + V  Q+WD  GQ     +   Y  GA G LLVYD+T + +F+N+  W   ++ + E ++   +V L+GNK DL H+  V  +    F ++        SA    +V   F +V  +I  I   +A
Sbjct:    6 EESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKADKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNKA 185          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASD_DICDI3.124e-1935.37Ras-like protein rasD OS=Dictyostelium discoideum ... [more]
RAN_DANRE3.124e-1934.36GTP-binding nuclear protein Ran OS=Danio rerio GN=... [more]
RASM_HUMAN4.081e-1935.09Ras-related protein M-Ras OS=Homo sapiens GN=MRAS ... [more]
RAN_SALSA4.081e-1935.26GTP-binding nuclear protein Ran OS=Salmo salar GN=... [more]
RASC_DICDI5.330e-1937.20Ras-like protein rasC OS=Dictyostelium discoideum ... [more]
RAS1_PHYPO5.330e-1933.52Ras-like protein 1 OS=Physarum polycephalum GN=RAS... [more]
RAS1_CANAL5.330e-1937.06Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=... [more]
RAN_CARAU5.330e-1934.36GTP-binding nuclear protein Ran OS=Carassius aurat... [more]
RAN4_ARATH5.330e-1932.30GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]
RAB28_MOUSE5.330e-1930.56Ras-related protein Rab-28 OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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