CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAN_CHICK (GTP-binding nuclear protein Ran OS=Gallus gallus GN=RAN PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19
Identity = 55/156 (35.26%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R + A S      F  +++L + + SA    N E  F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAN_CANFA (GTP-binding nuclear protein Ran OS=Canis familiaris GN=RAN PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19
Identity = 55/156 (35.26%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R + A S      F  +++L + + SA    N E  F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAN_BOVIN (GTP-binding nuclear protein Ran OS=Bos taurus GN=RAN PE=2 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19
Identity = 55/156 (35.26%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL--RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W R+L    + NI ++L GNK D+  R + A S      F  +++L + + SA    N E  F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RALB_PONAB (Ras-related protein Ral-B OS=Pongo abelii GN=RALB PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19
Identity = 57/187 (30.48%), Postives = 98/187 (52.41%), Query Frame = 3
Query:  114 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR--EHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSK 668
            L K++++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAGQE Y AI   Y+R   G LLV+ +T H +F     +  ++   +  +  I ++++GNK+DL     V  E+ ++ AE+  + ++ETSA    NV+  F +++ +I     K +     NG  S+   K
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIR--TKKMSENKDKNGKKSSKNKK 197          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RALB_HUMAN (Ras-related protein Ral-B OS=Homo sapiens GN=RALB PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19
Identity = 57/187 (30.48%), Postives = 98/187 (52.41%), Query Frame = 3
Query:  114 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR--EHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSK 668
            L K++++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAGQE Y AI   Y+R   G LLV+ +T H +F     +  ++   +  +  I ++++GNK+DL     V  E+ ++ AE+  + ++ETSA    NV+  F +++ +I     K +     NG  S+   K
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREIR--TKKMSENKDKNGKKSSKNKK 197          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB28_RAT (Ras-related protein Rab-28 OS=Rattus norvegicus GN=Rab28 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19
Identity = 55/180 (30.56%), Postives = 91/180 (50.56%), Query Frame = 3
Query:   96 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKV-VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRW---LRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRA 623
            +E  D   K+V++GD   GK++L + F +  F  + K TIG++F  R + +   + V  Q+WD  GQ     +   Y  GA G LLVYD+T + +F+N+  W   ++ + E ++   +V L+GNK DL H+  V  +    F ++        SA    +V   F +V  +I  I   +A
Sbjct:    6 EESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLNKA 185          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RALBA_XENLA (Ras-related protein ralB-A OS=Xenopus laevis GN=ralb-A PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.091e-19
Identity = 57/188 (30.32%), Postives = 97/188 (51.60%), Query Frame = 3
Query:  114 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR--EHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKG 671
            L K++++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAGQE Y AI   Y+R   G LLV+ +T H +F     +  ++   +  +  I ++++GNK+DL     V  ++ +  AE+  + ++ETSA    NV+  F +++ +I     K +     NG  S    KG
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLIVGNKSDLEDRRQVPMDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREIR--TKKMSENKDKNGKKSGKSKKG 198          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB7B_HUMAN (Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7B PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.091e-19
Identity = 50/156 (32.05%), Postives = 90/156 (57.69%), Query Frame = 3
Query:  120 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP---NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            KL+++G  GVGK++LL ++    F  E ++T+G    ++ + + +  +K QIWDT GQER+R++ S +Y+G+ G +L +DVT   +F+ +  W  ++     P   +  ++L+GNK DL     V  E  + +  ++ + + E SA +  NV  AF
Sbjct:   10 KLIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDLADR-KVPQEVAQGWCREKDIPYFEVSAKNDINVVQAF 164          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB24_HUMAN (Ras-related protein Rab-24 OS=Homo sapiens GN=RAB24 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.091e-19
Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  120 KLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL----RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 587
            K+V++G   VGK++L+ R+  + F +   ++TIG  F  + + + ++ V   IWDTAG ERY A++  YYRGA  A++ YD+T  ++F+    W++ELR   +    + L G K+DL    R    V   D + +A+       ETS+    +V+  F +V
Sbjct:    9 KVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRS-LEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKV 168          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAS_CRYNE (Ras-like protein OS=Cryptococcus neoformans GN=RAS1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 64/204 (31.37%), Postives = 101/204 (49.51%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCC 725
            +KLV++G  GVGKS L  +F ++ F  E   TI   +  + + ID +V    + DTAGQE Y A+   Y R   G LLVY +T  ++F+ V  + +++    D +   V+++ NK DL +   V   +G+  A++ +   +ETSA    NV+ AF  V+  I +   +       N  A +  S       + D  V K  GCC
Sbjct:   10 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCI-IDEEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRSSFEEVSTFHQQILRVKDKDYFPVVVVANKCDLEYERQVQPHEGRDLAKRFNAQCIETSAKQRVNVDEAFIAVVRAIRRYQKESGPPQAVNAPAKSQMSAVGGRAAEKDDHVDK--GCC 210          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN_CHICK6.961e-1935.26GTP-binding nuclear protein Ran OS=Gallus gallus G... [more]
RAN_CANFA6.961e-1935.26GTP-binding nuclear protein Ran OS=Canis familiari... [more]
RAN_BOVIN6.961e-1935.26GTP-binding nuclear protein Ran OS=Bos taurus GN=R... [more]
RALB_PONAB6.961e-1930.48Ras-related protein Ral-B OS=Pongo abelii GN=RALB ... [more]
RALB_HUMAN6.961e-1930.48Ras-related protein Ral-B OS=Homo sapiens GN=RALB ... [more]
RAB28_RAT6.961e-1930.56Ras-related protein Rab-28 OS=Rattus norvegicus GN... [more]
RALBA_XENLA9.091e-1930.32Ras-related protein ralB-A OS=Xenopus laevis GN=ra... [more]
RAB7B_HUMAN9.091e-1932.05Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7... [more]
RAB24_HUMAN9.091e-1932.92Ras-related protein Rab-24 OS=Homo sapiens GN=RAB2... [more]
RAS_CRYNE1.187e-1831.37Ras-like protein OS=Cryptococcus neoformans GN=RAS... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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