CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RALB_MOUSE (Ras-related protein Ral-B OS=Mus musculus GN=Ralb PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 56/187 (29.95%), Postives = 97/187 (51.87%), Query Frame = 3
Query:  114 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR--EHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSK 668
            L K++++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAGQE Y AI   Y+R   G LLV+ +T H +F     +  ++   +  +  I ++++GNK+DL     V  ++ +  AE+  + ++ETSA    NV+  F +++ +I     K +     NG  S+   K
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKSEEDKIPLLVVGNKSDLEERRQVPVDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREIR--AKKMSENKDKNGRKSSKSKK 197          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RALB_MACFA (Ras-related protein Ral-B OS=Macaca fascicularis GN=RALB PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.187e-18
Identity = 52/164 (31.71%), Postives = 91/164 (55.49%), Query Frame = 3
Query:  114 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR--EHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            L K++++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAGQE Y AI   Y+R   G LLV+ +T H +F     +  ++   +  +  I ++++GNK+DL     V  E+ ++ AE+  + ++ETSA    NV+  F +++ +I
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 176          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RALB_RAT (Ras-related protein Ral-B OS=Rattus norvegicus GN=Ralb PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.551e-18
Identity = 52/164 (31.71%), Postives = 90/164 (54.88%), Query Frame = 3
Query:  114 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR--EHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            L K++++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAGQE Y AI   Y+R   G LLV+ +T H +F     +  ++   +  +  I ++++GNK+DL     V  E+ +  AE+  + ++ETSA    NV+  F +++ +I
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREI 176          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RALBB_XENLA (Ras-related protein ralB-B OS=Xenopus laevis GN=ralb-B PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.551e-18
Identity = 56/188 (29.79%), Postives = 97/188 (51.60%), Query Frame = 3
Query:  114 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR--EHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKG 671
            L K++++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAGQE Y AI   Y+R   G LLV+ +T H +F     +  ++   +  +  I ++++GNK+DL     V  ++ +  AE+  + ++ETSA    NV+  F +++ ++     K +     NG  S    KG
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEDRRQVPMDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREVR--TKKMSENKDKNGKKSGKSKKG 198          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB24_MOUSE (Ras-related protein Rab-24 OS=Mus musculus GN=Rab24 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.551e-18
Identity = 53/161 (32.92%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  120 KLVLIGDSGVGKSNLLSRFTKNEFNLES-KSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL----RHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEV 587
            K+V++G   VGK++L+ R+  + F +   ++TIG  F  + + + ++ V   IWDTAG ERY A++  YYRGA  A++ YD+T  ++F+    W++ELR   +    + L G K+DL    R    V   D + +A+       ETS+    +V+  F +V
Sbjct:    9 KVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMCVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRS-LEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKV 168          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: DJC27_BOVIN (DnaJ homolog subfamily C member 27 OS=Bos taurus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.551e-18
Identity = 48/192 (25.00%), Postives = 94/192 (48.96%), Query Frame = 3
Query:  120 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-----NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETI 680
            K++ +G++ VGKS ++ R+ +  F  +  +TIG+++    +++ ++ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F  +  WL E+++   P     NI+  +  NK D      V   +G+ +AE +   + ETSA     +   F      I  +         +N +AS    + +TI
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGDPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDTWLAEMKQDLGPHGNMENIVFAVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYLSIVDLCENGGKRPNTNSSASFTKEQADTI 209          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RASS_DICDI (Ras-like protein rasS OS=Dictyostelium discoideum GN=rasS PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.025e-18
Identity = 57/164 (34.76%), Postives = 90/164 (54.88%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            FKLVL+G  GVGKS L  +F   +F  E   T+   +  ++  +D +     I+DTAGQE + A+   Y R   G L VY +T   +F+ + R    L +  D  ++  +L+GNK DL     VST +G+  A++ +  F+ETSA +  NV  +F E++ ++ K
Sbjct:    4 FKLVLVGPGGVGKSCLTIQFIAQKFVDEYDPTLEDSYRKQTT-VDGEECLLDIYDTAGQEDFSAVRDQYMRTGEGFLCVYSITYLQSFKEIHRLHNHLLKVKDLDSVPFVLVGNKCDLNEYREVSTAEGEELAKKLNCKFLETSAKERINVSESFYELVREVKK 166          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RABO_DICDI (Ras-related protein RabO OS=Dictyostelium discoideum GN=rabO PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.025e-18
Identity = 55/171 (32.16%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   96 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDL---RHLVAVSTEDGKAFAEQE------SLYFMETSALDATNVENAF 578
            D +   L ++VL+GD  VGK+     F   +F+      IGV+F  + + +DN+ V+ Q+WDT GQER++ IT +Y+R     LL + V    +F+N+  W     E  D  N  V+L+GNK DL   +H++     +     +Q       S+ + ETSA +  N+   F
Sbjct:    2 DIDNSILIRVVLLGDYCVGKTTTGFVFDGKQFDFSRNCNIGVDFFVKHIVVDNQCVRLQVWDTGGQERFKTITRSYFRNTSCCLLFFSVDDQKSFENIDMWYSLAFEKYDLLNYPVVLVGNKIDLPQEKHVITKKMAEEWCKNQQTKLNLKFSIPYFETSAKNNININEIF 172          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: GSP1_CANGA (GTP-binding nuclear protein GSP1/Ran OS=Candida glabrata GN=GSP1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.025e-18
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR-HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            FKLVL+GD G GK+  + R    EF  +  +TIGVE    +   +   +K  +WDTAGQE++  +   YY  A   ++++DVT   T++NV  W R+L    + NI ++L GNK D++   V   T     F  +++L + + SA    N E  F
Sbjct:    8 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFHTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKERKVKAKT---ITFHRKKNLQYYDISAKSNYNFEKPF 158          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: DJC27_RAT (DnaJ homolog subfamily C member 27 OS=Rattus norvegicus GN=Dnajc27 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 47/192 (24.48%), Postives = 94/192 (48.96%), Query Frame = 3
Query:  120 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-----NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETI 680
            K++ +G++ VGKS ++ R+ +  F  +  +TIG+++    +++ ++ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F  +  WL E+++   P     NI+ ++  NK D      +   +G+ +AE     + ETSA     +   F      I  +         +N +AS    + +TI
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMENIVFVVCANKIDCSKHRCIDESEGRLWAESRGFLYFETSAQTGEGINEMFQTFYMSIVDLCENGGKRPTANSSASYTKEQADTI 209          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RALB_MOUSE1.187e-1829.95Ras-related protein Ral-B OS=Mus musculus GN=Ralb ... [more]
RALB_MACFA1.187e-1831.71Ras-related protein Ral-B OS=Macaca fascicularis G... [more]
RALB_RAT1.551e-1831.71Ras-related protein Ral-B OS=Rattus norvegicus GN=... [more]
RALBB_XENLA1.551e-1829.79Ras-related protein ralB-B OS=Xenopus laevis GN=ra... [more]
RAB24_MOUSE1.551e-1832.92Ras-related protein Rab-24 OS=Mus musculus GN=Rab2... [more]
DJC27_BOVIN1.551e-1825.00DnaJ homolog subfamily C member 27 OS=Bos taurus G... [more]
RASS_DICDI2.025e-1834.76Ras-like protein rasS OS=Dictyostelium discoideum ... [more]
RABO_DICDI2.025e-1832.16Ras-related protein RabO OS=Dictyostelium discoide... [more]
GSP1_CANGA2.025e-1834.84GTP-binding nuclear protein GSP1/Ran OS=Candida gl... [more]
DJC27_RAT2.645e-1824.48DnaJ homolog subfamily C member 27 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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