CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: DJC27_HUMAN (DnaJ homolog subfamily C member 27 OS=Homo sapiens GN=DNAJC27 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 52/205 (25.37%), Postives = 98/205 (47.80%), Query Frame = 3
Query:  120 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-----NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETI----NVKDDSSVL 707
            K++ +G++ VGKS ++ R+ +  F  +  +TIG+++    + + ++ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F  +  WL E+++   P     NII ++  NK D      V   +G+ +AE +   + ETSA     +   F      I  +         +N +AS    + + I    N KD   +L
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYISIVDLCENGGKRPTTNSSASFTKEQADAIRRIRNSKDSWDML 222          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RASM_RAT (Ras-related protein M-Ras OS=Rattus norvegicus GN=Mras PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.455e-18
Identity = 60/170 (35.29%), Postives = 96/170 (56.47%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLR-ELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALD-ATNVENAFTEVLTQIYKIVSKR 620
            +KLV++GD GVGKS L  +F +  F  +   TI   +   +  IDN+     + DTAGQE + A+   Y R   G L+VY VT  A+F++V R+ +  LR     +  ++L+ NK DL HL  V+ + GK  A + ++ ++ETSA D   NV+  F +++  I + V ++
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQVPEK 182          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RASM_MOUSE (Ras-related protein M-Ras OS=Mus musculus GN=Mras PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.455e-18
Identity = 60/170 (35.29%), Postives = 96/170 (56.47%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLR-ELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALD-ATNVENAFTEVLTQIYKIVSKR 620
            +KLV++GD GVGKS L  +F +  F  +   TI   +   +  IDN+     + DTAGQE + A+   Y R   G L+VY VT  A+F++V R+ +  LR     +  ++L+ NK DL HL  V+ + GK  A + ++ ++ETSA D   NV+  F +++  I + V ++
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQVPEK 182          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.455e-18
Identity = 57/168 (33.93%), Postives = 95/168 (56.55%), Query Frame = 3
Query:  114 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHT---DPNII-VMLIGNKTDLRHLVAVSTEDGKAFAEQE---SLYFMETSALDATNVENAFTEVLTQ 596
            + K+V+IG+  VGK+++L R+    F +  K TIGV+F    + +   +V  Q+WDT+GQER+R++  +YYRGA   +LV+DVT   T  ++  W  +  E T   DP +   +++GNK D  + V V+ +    + +     +L + +TSA D  N+E  F  +  Q
Sbjct:    7 IIKVVIIGEKSVGKTSILRRYVDKRF-VTLKPTIGVDF----VMVSENMVTLQLWDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDPILFPFIILGNKIDDPNRV-VTEKAAIQWCKDNIGGNLTYFDTSAKDNINIEQVFKHISNQ 168          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.455e-18
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR-HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            FKLVL+GD G GK+  + R    EF  +  +TIGVE    +   +   +K  +WDTAGQE++  +   YY  A   ++++DVT   T++NV  W R+L    + NI ++L GNK D++   V   T     F  +++L + + SA    N E  F
Sbjct:    8 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKERKVKAKT---ITFHRKKNLQYYDISAKSNYNFEKPF 158          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: DJ27A_XENLA (DnaJ homolog subfamily C member 27-A OS=Xenopus laevis GN=dnajc27-A PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.455e-18
Identity = 55/205 (26.83%), Postives = 101/205 (49.27%), Query Frame = 3
Query:  120 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-----NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIV---SKRAVEAGSNG-TASTLPSKGETINVKDDSSVL 707
            K++ +G++ VGKS ++ R+ +  F  + ++TIG+++    + I ++ +K  I+D AG   +  + + +Y+   G +LVYDV    TF+++  WL E+++   P     NI+  +  NK D     +V   +G+ ++E +   + ETSA     +   F    + I  +     KR V A + G T     S     N KD   +L
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVHIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGHKETFESLDGWLAEMKQELGPQGNIDNIVFAVCANKIDSTKHRSVDESEGRLWSESKGFLYFETSAQSGEGINEMFQAFYSAIVDLCDNGGKRPVSAINIGFTKEQADSIRRIRNCKDSWDML 222          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.512e-18
Identity = 52/155 (33.55%), Postives = 82/155 (52.90%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR-HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   ++  +WDTAGQE++  +   YY     A++++DVT   T++NV  W R+L    + NI ++L GNK D++   V   T     F  +++L + + SA    N E  F
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCE-NIPIVLCGNKVDVKDRKVKAKT---ITFHRKKNLQYYDISAKSNYNFEKPF 160          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSJ (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. japonica GN=RAN3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.512e-18
Identity = 54/171 (31.58%), Postives = 87/171 (50.88%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 629
            FKL+L+GD G GK+  + R    EF    + TIGVE            V+   WDTAGQE++  +   YY     A++++DVT   T++NV  W +++    D NI ++L GNK D+++    +      F  +++L + E SA    N E  F  +  ++   ++ R VE
Sbjct:   18 FKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVCD-NIPIVLCGNKVDMKNRQVKAKM--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTGDMNLRFVE 185          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSI (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. indica GN=RAN3 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.512e-18
Identity = 54/171 (31.58%), Postives = 87/171 (50.88%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 629
            FKL+L+GD G GK+  + R    EF    + TIGVE            V+   WDTAGQE++  +   YY     A++++DVT   T++NV  W +++    D NI ++L GNK D+++    +      F  +++L + E SA    N E  F  +  ++   ++ R VE
Sbjct:   18 FKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVCD-NIPIVLCGNKVDMKNRQVKAKM--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTGDMNLRFVE 185          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: DJC27_PONAB (DnaJ homolog subfamily C member 27 OS=Pongo abelii GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.512e-18
Identity = 48/192 (25.00%), Postives = 93/192 (48.44%), Query Frame = 3
Query:  120 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-----NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETI 680
            K++ +G++ VGKS ++ R+ +  F  +  +TIG+++    + + ++ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F  +  WL E+++   P     NII ++  NK D      V   +G+ +AE +   + ETSA     +   F      I  +         +N +AS    + + I
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYISIVDLCENGGKRPTTNSSASFTKEQADAI 209          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DJC27_HUMAN2.645e-1825.37DnaJ homolog subfamily C member 27 OS=Homo sapiens... [more]
RASM_RAT3.455e-1835.29Ras-related protein M-Ras OS=Rattus norvegicus GN=... [more]
RASM_MOUSE3.455e-1835.29Ras-related protein M-Ras OS=Mus musculus GN=Mras ... [more]
RAB7B_DICDI3.455e-1833.93Ras-related protein Rab-7B OS=Dictyostelium discoi... [more]
GSP1_ASHGO3.455e-1834.84GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos... [more]
DJ27A_XENLA3.455e-1826.83DnaJ homolog subfamily C member 27-A OS=Xenopus la... [more]
RAN_CAEEL4.512e-1833.55GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
RAN3_ORYSJ4.512e-1831.58GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN3_ORYSI4.512e-1831.58GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
DJC27_PONAB4.512e-1825.00DnaJ homolog subfamily C member 27 OS=Pongo abelii... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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