CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: DJC27_MOUSE (DnaJ homolog subfamily C member 27 OS=Mus musculus GN=Dnajc27 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.512e-18
Identity = 50/205 (24.39%), Postives = 100/205 (48.78%), Query Frame = 3
Query:  120 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-----NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETI----NVKDDSSVL 707
            K++ +G++ VGKS ++ R+ +  F  +  +TIG+++    +++ ++ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F  +  WL E+++   P     NI+ ++  NK D      +   +G+ +AE +   + ETSA     +   F      I  +         ++ +AS    + +TI    N KD   +L
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMDNIVFVVCANKIDCSKHRCIDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYLSIVDLCENGGKRPTASSSASFTKEQADTIRRIRNSKDSWEML 222          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RASW_DICDI (Ras-like protein rasW OS=Dictyostelium discoideum GN=rasW PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 67/215 (31.16%), Postives = 107/215 (49.77%), Query Frame = 3
Query:   78 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRI 716
            M  YK +     +  L ++GD GVGK+ +  +F  N F      TI   +  + L +D++V    I DTAGQ+   A+   + R   G +LVY VT  ++F  + ++ RE  +R     ++ +M+IGNK DL     V+ ++GK  A    + FME SA + TNVE  F E +      + KR  +  S+  +    SK   +N    S ++K+I
Sbjct:    1 MTSYKNNN----VISLCIMGDGGVGKTAVTIQFISNHFVYYYDPTIEDSYRKQCL-VDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFILVYSVTSRSSFDQI-QFFREQIIRVLDSDDVPIMMIGNKIDLDDERQVTFQEGKDLARCLGMSFMEVSAKNRTNVEEVFNETVR-----IVKRKEDPQSHKPSKDSDSKKPLVNT---SKIIKKI 201          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RASG_DICDI (Ras-like protein rasG OS=Dictyostelium discoideum GN=rasG PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 57/164 (34.76%), Postives = 86/164 (52.44%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVML-IGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE Y A+   Y R   G L VY +T  ++F  +  +  ++    D + + M+ +GNK DL     V+T +G+  A+     F+ETSA    NVE AF  ++ +I K
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDRVPMIVVGNKCDLESDRQVTTGEGQDLAKSFGSPFLETSAKIRVNVEEAFYSLVREIRK 166          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAS2_HYDMA (Ras-like protein RAS2 OS=Hydra magnipapillata GN=RAS2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 59/177 (33.33%), Postives = 98/177 (55.37%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 629
            + D  +KLV++G  GVGKS L  +F ++ F  +   TI   +  + + ID+KV    I DTAGQE + A+   Y R   G LLV+ VT  ++F  + R+  + LR        ++L+GNK+DL +   VST + +    +  + ++E+SA    NV+ AF +++  I +  +K +VE
Sbjct:    4 DLDRQYKLVVVGGGGVGKSALTIQFIQSHFVQDYDPTIEDSYRKQCV-IDDKVAHLDILDTAGQEEFSAMRDEYMRTGEGFLLVFSVTDRSSFDEIPRFHTQILRVKDIEEFPMILVGNKSDLENERTVSTAEAQELGRKLKVSYLESSAKQRINVDAAFHDLVRAI-RNANKASVE 178          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAS2_DROME (Ras-like protein 2 OS=Drosophila melanogaster GN=Ras64B PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 55/164 (33.54%), Postives = 90/164 (54.88%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVML-IGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            +KLV++G  GVGKS +  +F ++ F  +   TI   + T+   ID+   K  I DTAGQE + A+   Y R   G LLV+ +  H++F  + ++ R++    D +   ML +GNK DL+H   VS E+ +  +    + ++E SA    NV+ AF E++  + K
Sbjct:    6 YKLVVVGGGGVGKSAITIQFIQSYFVTDYDPTIEDSY-TKQCNIDDVPAKLDILDTAGQEEFSAMREQYMRSGEGFLLVFALNDHSSFDEIPKFQRQILRVKDRDEFPMLMVGNKCDLKHQQQVSLEEAQNTSRNLMIPYIECSAKLRVNVDQAFHELVRIVRK 168          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: GSP1_NEUCR (GTP-binding nuclear protein GSP1/Ran OS=Neurospora crassa GN=gsp-1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 56/172 (32.56%), Postives = 88/172 (51.16%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR-HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 629
            FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   ++  +WDTAGQE++  +   YY      ++++DVT   T++NV  W R+L    + NI ++L GNK D++   V   T     F  +++L + + SA    N E  F   L    K+V   A+E
Sbjct:    8 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYMATLGVEVHPLGFSTNFGQIQFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLTRVCE-NIPIVLCGNKVDVKERKVKAKT---ITFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLVGNNALE 172          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: GSP1_ENCCU (GTP-binding nuclear protein GSP1 OS=Encephalitozoon cuniculi GN=GSP1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.893e-18
Identity = 49/156 (31.41%), Postives = 79/156 (50.64%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIG-VEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATN 563
            E  +  +K+ LIGD GVGK+  ++R     F     +T+G V      L     V+K  +WDTAGQE+   +   YY GA GA+  +DVT   T QN+ RW++E +        +++  NK D+++   +S +      + ++  + E SA  A N
Sbjct:    2 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAIFFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 157          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.696e-18
Identity = 56/164 (34.15%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            +KLV++G  GVGKS L  +F ++ F  E   TI   +  + + ID++V    + DTAGQE Y A+   Y R   G LLVY +T   +F+ +  + ++ LR        V+++ NK DL +   V   +G+  A      F+ETSA    NV+ AF +++ +I K
Sbjct:   11 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKDQDTFPVVVVANKCDLEYERQVGMNEGRDLARHFGCKFVETSAKVRINVDQAFQDLVREIRK 173          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSJ (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. japonica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.696e-18
Identity = 51/154 (33.12%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            FKLV++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT   T++NV  W R+L    + NI ++L GNK D+++    + +    F  +++L + E SA    N E  F
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 164          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSI (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.696e-18
Identity = 51/154 (33.12%), Postives = 82/154 (53.25%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            FKLV++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT   T++NV  W R+L    + NI ++L GNK D+++    + +    F  +++L + E SA    N E  F
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 164          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DJC27_MOUSE4.512e-1824.39DnaJ homolog subfamily C member 27 OS=Mus musculus... [more]
RASW_DICDI5.893e-1831.16Ras-like protein rasW OS=Dictyostelium discoideum ... [more]
RASG_DICDI5.893e-1834.76Ras-like protein rasG OS=Dictyostelium discoideum ... [more]
RAS2_HYDMA5.893e-1833.33Ras-like protein RAS2 OS=Hydra magnipapillata GN=R... [more]
RAS2_DROME5.893e-1833.54Ras-like protein 2 OS=Drosophila melanogaster GN=R... [more]
GSP1_NEUCR5.893e-1832.56GTP-binding nuclear protein GSP1/Ran OS=Neurospora... [more]
GSP1_ENCCU5.893e-1831.41GTP-binding nuclear protein GSP1 OS=Encephalitozoo... [more]
RAS_LENED7.696e-1834.15Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]
RAN2_ORYSJ7.696e-1833.12GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN2_ORYSI7.696e-1833.12GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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