CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAL_DISOM (Ras-related protein O-RAL OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.313e-17
Identity = 56/187 (29.95%), Postives = 97/187 (51.87%), Query Frame = 3
Query:  114 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELR--EHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSK 668
            L K++++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAGQE Y AI   Y+R   G L V+ +T   +F     +  ++   +  +  I ++L+GNK+DL     VS E+ ++ AE+  + ++ETSA    NV+  F +++ ++     K +     NG  S+   K
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEQESFTATVEFREQILRVKAEEDKIPLLLVGNKSDLEDRRQVSIEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREVR--AKKMSENKDKNGKKSSRNKK 197          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: DJC27_DANRE (DnaJ homolog subfamily C member 27 OS=Danio rerio GN=dnajc27 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.313e-17
Identity = 44/165 (26.67%), Postives = 86/165 (52.12%), Query Frame = 3
Query:  120 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-----PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            K++ +G++ VGKS ++ R+ +  F  +  +TIG+++    +++ ++ +K  I+D AG   +  + + +Y+ + G +LVYDV    +F  +  WL E+++         NII ++  NK DL     V   +G+ +AE    ++ ETSA     +   F    + I
Sbjct:   18 KVISLGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDSQGVILVYDVGLRESFDALDSWLTEMKQEMGSQANMENIIFVVCANKVDLTKRRVVDESEGRLWAESRGFHYFETSAQSGEGINEMFQSFFSSI 182          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAS2_RHIRA (Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.714e-17
Identity = 53/162 (32.72%), Postives = 88/162 (54.32%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            +K+V++GD GVGKS +  +F ++ F  E   TI   +  + L ID++     I DTAGQE Y A+   + R   G +L+Y +T + TF+ V +   ++    D  +  ++L+GNK DL     V T  G+  A+Q +  F E SA     +++AF  ++ +I
Sbjct:   12 YKIVMVGDGGVGKSAMTIQFIQSTFVDEYDPTIEDSYRKQCL-IDSECAMLDILDTAGQEEYSAMRERFMRNGEGFVLIYSITSYHTFEQVQKLHEQIARVKDLEHFPMVLVGNKCDLEQDRQVPTSAGRDLAKQYNCQFFEASAKQNVRIQDAFHGLVREI 172          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAP2B_RAT (Ras-related protein Rap-2b OS=Rattus norvegicus GN=Rap2b PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.714e-17
Identity = 54/163 (33.13%), Postives = 92/163 (56.44%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            +K+V++G  GVGKS L  +F    F  +   TI  +F  + + +D+     +I DTAG E++ ++   Y +   G +LVY +    +FQ++ + +R+  +R      + ++L+GNK DL     VS  +GKA AE+ S  FMETSA +  +V+  F E++ Q+
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQM 164          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAP2B_MOUSE (Ras-related protein Rap-2b OS=Mus musculus GN=Rap2b PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.714e-17
Identity = 54/163 (33.13%), Postives = 92/163 (56.44%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            +K+V++G  GVGKS L  +F    F  +   TI  +F  + + +D+     +I DTAG E++ ++   Y +   G +LVY +    +FQ++ + +R+  +R      + ++L+GNK DL     VS  +GKA AE+ S  FMETSA +  +V+  F E++ Q+
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQM 164          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAP2B_HUMAN (Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2B PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.714e-17
Identity = 54/163 (33.13%), Postives = 92/163 (56.44%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            +K+V++G  GVGKS L  +F    F  +   TI  +F  + + +D+     +I DTAG E++ ++   Y +   G +LVY +    +FQ++ + +R+  +R      + ++L+GNK DL     VS  +GKA AE+ S  FMETSA +  +V+  F E++ Q+
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQM 164          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAP2A_PIG (Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.714e-17
Identity = 54/163 (33.13%), Postives = 92/163 (56.44%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            +K+V++G  GVGKS L  +F    F  +   TI  +F  + + +D+     +I DTAG E++ ++   Y +   G +LVY +    +FQ++ + +R+  +R      + ++L+GNK DL     VS  +GKA AE+ S  FMETSA +  +V+  F E++ Q+
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYERVPMILVGNKVDLEGEREVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQM 164          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.714e-17
Identity = 52/155 (33.55%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR-HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            FKLVL+GD G GK+  + R    EF     +T+GVE    +   D   ++  +WDTAGQE++  +   YY      ++++DVT   T++NV  W R+L    + NI ++L GNK D++   V   T     F  +++L + + SA    N E  F
Sbjct:    8 FKLVLVGDGGTGKTTFVKRHETGEFVNRYNATLGVEVHPLNFATDCGNIRFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKERKVKAKT---ITFHRKKNLQYYDISAKSNYNFEKPF 158          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RIT2_RAT (GTP-binding protein Rit2 OS=Rattus norvegicus GN=Rit2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 56/163 (34.36%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE--HTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            +K+V++G  GVGKS +  +F  ++F      TI   + T+ +RIDN+     I DTAGQ  + A+   Y RG  G ++ Y VT   +FQ   ++   + +  HT   I ++L+GNK DL     VSTE+G   A   +  F ETSA     +++AF  ++ +I
Sbjct:   21 YKVVMLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQ-VRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHT-YEIPLVLVGNKIDLEQFRQVSTEEGMTLARDYNCAFFETSAALRFGIDDAFQGLVREI 181          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: GSP1_CANAL (GTP-binding nuclear protein GSP1/Ran OS=Candida albicans GN=GSP1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 52/155 (33.55%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR-HLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            FKLVL+GD G GK+  + R    EF  +  +T+GVE        +   +K  +WDTAGQE++  +   YY      ++++DVT   T++NV  W R+L    + NI ++L GNK D++   V   T     F  +++L + + SA    N E  F
Sbjct:    8 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVNPLGFHTNFGELKFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKERKVKAKT---ITFHRKKNLQYYDISAKSNYNFEKPF 158          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAL_DISOM1.313e-1729.95Ras-related protein O-RAL OS=Discopyge ommata PE=2... [more]
DJC27_DANRE1.313e-1726.67DnaJ homolog subfamily C member 27 OS=Danio rerio ... [more]
RAS2_RHIRA1.714e-1732.72Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2... [more]
RAP2B_RAT1.714e-1733.13Ras-related protein Rap-2b OS=Rattus norvegicus GN... [more]
RAP2B_MOUSE1.714e-1733.13Ras-related protein Rap-2b OS=Mus musculus GN=Rap2... [more]
RAP2B_HUMAN1.714e-1733.13Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2... [more]
RAP2A_PIG1.714e-1733.13Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A ... [more]
GSP1_YARLI1.714e-1733.55GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]
RIT2_RAT2.239e-1734.36GTP-binding protein Rit2 OS=Rattus norvegicus GN=R... [more]
GSP1_CANAL2.239e-1733.55GTP-binding nuclear protein GSP1/Ran OS=Candida al... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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