CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:171..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAS2_PHYPO (Ras-like protein 2 OS=Physarum polycephalum GN=RAS-2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.924e-17
Identity = 57/166 (34.34%), Postives = 85/166 (51.20%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIV 611
            +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE Y A+   Y R   G ++VY +T  ++F  +  +  ++    D + + M L GNK DL     V+T +G+  A      F+ETSA    NVE  F  ++ +I K V
Sbjct:    6 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFVMVYSITSRSSFDEINAFREQILRVKDKDTVPMVLAGNKCDLASERQVTTNEGQELARAFGCPFVETSAKARLNVEECFYGLVREIRKEV 170          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAN_PLAFA (GTP-binding nuclear protein Ran OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.924e-17
Identity = 49/160 (30.63%), Postives = 85/160 (53.12%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            +EY   +KL+L+GD GVGK+  + R    EF  +   T+GVE      + +    +  +WDTAGQE++  +   YY  +  A++++DV+   T++NV  W R++    +  I ++L+GNK D++     S +    F  + +L + + SA    N E  F
Sbjct:    4 QEYIPQYKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFQTNFGKTQFNVWDTAGQEKFGGLRDGYYIKSDCAIIMFDVSSRITYKNVPNWYRDITRVCE-TIPMVLVGNKVDVKDRQVKSRQ--IQFHRKRNLQYYDLSARSNYNFEKPF 160          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RIT2_MOUSE (GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.819e-17
Identity = 56/163 (34.36%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELRE--HTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            +K+V++G  GVGKS +  +F  ++F      TI   + T+ +RIDN+     I DTAGQ  + A+   Y RG  G ++ Y VT   +FQ   ++   + +  HT   I ++L+GNK DL     VSTE+G   A   +  F ETSA     +++AF  ++ +I
Sbjct:   21 YKVVMLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQ-VRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHT-YEIPLVLVGNKIDLEQFRQVSTEEGMNLARDYNCAFFETSAALRFGIDDAFQGLVREI 181          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RIT1_MOUSE (GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.819e-17
Identity = 54/164 (32.93%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL-REHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            +KLV++G  GVGKS +  +F  + F  +   TI   +  R +RID++     I DTAGQ  + A+   Y R   G ++ Y +T   +F  V  + + + R     +  V+L+GNK+DL+ L  VS E+G + A + S  F ETSA     +++ F  ++ +I K
Sbjct:   22 YKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQVSKEEGLSLAREFSCPFFETSAAYRYYIDDVFHALVREIRK 184          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAS3_DROME (Ras-like protein 3 OS=Drosophila melanogaster GN=R PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.819e-17
Identity = 58/165 (35.15%), Postives = 91/165 (55.15%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYK 605
            +K+V++G  GVGKS L  +F +  F  +   TI   +  + + +D +    +I DTAG E++ A+   Y +   G +LVY +T  +TF ++ + LRE  LR     ++ ++L+GNK DL     V  E GK  A Q +  FMETSA    NV + F +++ QI K
Sbjct:    4 YKIVVLGSGGVGKSALTVQFVQCIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDL-QDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKELGKNLATQFNCAFMETSAKAKVNVNDIFYDLVRQINK 166          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RASY_DICDI (Ras-like protein rasY OS=Dictyostelium discoideum GN=rasY PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.988e-17
Identity = 58/161 (36.02%), Postives = 87/161 (54.04%), Query Frame = 3
Query:  114 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL 590
            L KL ++GD GVGK+++  +F  N F      TI   +  + L ID++V    I DTAGQ+   A+   + R   G +LVY VT  ++F  V ++ RE  +R     ++ +M+IGNK+DL     V+ ++GK  A    + FME SA    NVE  F E +
Sbjct:   10 LVKLCIMGDGGVGKTSVTIQFISNHFVHYYDPTIEDSYRKQCL-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFILVYSVTSRSSFDQV-QFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTFQEGKDLARCLGMSFMEVSAKTRLNVEEVFNETV 168          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RALA_DROME (Ras-related protein Ral-a OS=Drosophila melanogaster GN=Rala PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.988e-17
Identity = 54/163 (33.13%), Postives = 88/163 (53.99%), Query Frame = 3
Query:  114 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            L K++++G  GVGKS L  +F  +EF +E       +   + + +D + V+  I DTAGQE Y AI   Y+R   G L V+ +T   +FQ    +  + LR   D +I  +L+GNK DL     V   + +  A+Q ++ ++ETSA    NV+  F +++ +I
Sbjct:   11 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQATQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPLSECQLRAQQWAVPYVETSAKTRENVDKVFFDLMREI 172          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RASZ_DICDI (Ras-like protein rasZ OS=Dictyostelium discoideum GN=rasZ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 58/176 (32.95%), Postives = 92/176 (52.27%), Query Frame = 3
Query:   78 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            MA YK +     L +L ++GD GVGK+ +  +F  N F      TI   +  + + ID++V    I DTAGQ+   A+   + R   G +LVY +T  ++F  V ++ RE  +R     ++ +M+IGNK+DL     V+ ++GK  A    + FME SA    N+E  F E +  +
Sbjct:    1 MASYKNNN----LVRLCIMGDGGVGKTAVTIQFISNHFVYYYDPTIEDSYRKQCV-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSITSRSSFDQV-QFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTYQEGKDLARCLGMSFMEVSAKSRANIEEVFNETVRSV 170          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: DJC27_CHICK (DnaJ homolog subfamily C member 27 OS=Gallus gallus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 42/158 (26.58%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  120 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP-----NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF 578
            K++ +G++ VGKS ++ R+ +  F  +  +TIG+++    +++ ++ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F  +  WL E+++   P     NI+ ++  NK D     +V   +G+ +AE     + ETSA     +   F
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFDALDAWLAEMKQELGPHGNMDNIVFVVCANKIDCTKHRSVDESEGRLWAESRGFLYFETSAQTGEGINEMF 175          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RIT1_HUMAN (GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.509e-17
Identity = 53/162 (32.72%), Postives = 87/162 (53.70%), Query Frame = 3
Query:  117 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLREL-REHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            +KLV++G  GVGKS +  +F  + F  +   TI   +  R +RID++     I DTAGQ  + A+   Y R   G ++ Y +T   +F  V  + + + R     +  V+L+GNK+DL+ L  V+ E+G A A + S  F ETSA     +++ F  ++ +I
Sbjct:   22 YKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQVTKEEGLALAREFSCPFFETSAAYRYYIDDVFHALVREI 182          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS2_PHYPO2.924e-1734.34Ras-like protein 2 OS=Physarum polycephalum GN=RAS... [more]
RAN_PLAFA2.924e-1730.63GTP-binding nuclear protein Ran OS=Plasmodium falc... [more]
RIT2_MOUSE3.819e-1734.36GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 P... [more]
RIT1_MOUSE3.819e-1732.93GTP-binding protein Rit1 OS=Mus musculus GN=Rit1 P... [more]
RAS3_DROME3.819e-1735.15Ras-like protein 3 OS=Drosophila melanogaster GN=R... [more]
RASY_DICDI4.988e-1736.02Ras-like protein rasY OS=Dictyostelium discoideum ... [more]
RALA_DROME4.988e-1733.13Ras-related protein Ral-a OS=Drosophila melanogast... [more]
RASZ_DICDI6.515e-1732.95Ras-like protein rasZ OS=Dictyostelium discoideum ... [more]
DJC27_CHICK6.515e-1726.58DnaJ homolog subfamily C member 27 OS=Gallus gallu... [more]
RIT1_HUMAN8.509e-1732.72GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 P... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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