CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:171..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 1.943e-45
Identity = 85/175 (48.57%), Postives = 121/175 (69.14%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 629
            Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR + +  + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR +T+ ++  WL + R  T+PN +++LIGNK DL     V+ E+ K FAE+  L F+E SA    NVE+AF E   +IY+ +   +++
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLD 182          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 1.943e-45
Identity = 85/175 (48.57%), Postives = 121/175 (69.14%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 629
            Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR + +  + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR +T+ ++  WL + R  T+PN +++LIGNK DL     V+ E+ K FAE+  L F+E SA    NVE+AF E   +IY+ +   +++
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLD 182          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 1.943e-45
Identity = 85/175 (48.57%), Postives = 121/175 (69.14%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 629
            Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR + +  + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR +T+ ++  WL + R  T+PN +++LIGNK DL     V+ E+ K FAE+  L F+E SA    NVE+AF E   +IY+ +   +++
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLD 182          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 182.57 bits (462), Expect = 1.943e-45
Identity = 85/175 (48.57%), Postives = 121/175 (69.14%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 629
            Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR + +  + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR +T+ ++  WL + R  T+PN +++LIGNK DL     V+ E+ K FAE+  L F+E SA    NVE+AF E   +IY+ +   +++
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLD 182          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 1.943e-45
Identity = 85/175 (48.57%), Postives = 121/175 (69.14%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVE 629
            Y Y+FK ++IGD GVGKS LL +FT+ +F  +   TIGVEF TR + +  + +K QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR +T+ ++  WL + R  T+PN +++LIGNK DL     V+ E+ K FAE+  L F+E SA    NVE+AF E   +IY+ +   +++
Sbjct:    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLD 182          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.330e-45
Identity = 99/210 (47.14%), Postives = 131/210 (62.38%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRI--GCC 725
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +   N+  +L+GNK+DL     V     K FA+   + F+ETSA +ATNVE AF  +  +I K +   A             S GE  N+K DS+ +K    GCC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAA------------SGGERPNLKIDSTPVKPAGGGCC 201          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.330e-45
Identity = 99/210 (47.14%), Postives = 131/210 (62.38%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRI--GCC 725
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +   N+  +L+GNK+DL     V     K FA+   + F+ETSA +ATNVE AF  +  +I K +   A             S GE  N+K DS+ +K    GCC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAA------------SGGERPNLKIDSTPVKPAGGGCC 201          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.330e-45
Identity = 99/210 (47.14%), Postives = 131/210 (62.38%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRI--GCC 725
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +   N+  +L+GNK+DL     V     K FA+   + F+ETSA +ATNVE AF  +  +I K +   A             S GE  N+K DS+ +K    GCC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAA------------SGGERPNLKIDSTPVKPAGGGCC 201          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.655e-45
Identity = 98/210 (46.67%), Postives = 131/210 (62.38%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRI--GCC 725
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQER+R +TS+YYRGA G ++VYDVT   ++ NV +WL+E+  +   N+  +L+GNK+DL     V     K FA+   + F+ETSA +ATNVE AF  +  +I K +   A             S GE  N+K DS+ +K    GCC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAA------------SGGERPNLKIDSTPVKSASGGCC 201          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.655e-45
Identity = 99/210 (47.14%), Postives = 131/210 (62.38%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRI--GCC 725
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV +WL+E+  +   N+  +L+GNK+DL     V     K FA+   + F+ETSA +ATNVE AF  +  +I K +   A             S GE  N+K DS+ +K    GCC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAA------------SGGERPNLKIDSTPVKPASGGCC 201          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB14_PONAB1.943e-4548.57Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG1.943e-4548.57Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]
RAB14_MOUSE1.943e-4548.57Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN1.943e-4548.57Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK1.943e-4548.57Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
RAB1B_PONAB4.330e-4547.14Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_MACFA4.330e-4547.14Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB1B_HUMAN4.330e-4547.14Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_RAT5.655e-4546.67Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1B_MOUSE5.655e-4547.14Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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