CX290269

Overview
NameCX290269
Unique NameCX290269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig777 contig Ccv1_Contig777:171..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.806e-44
Identity = 86/180 (47.78%), Postives = 122/180 (67.78%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNG 644
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + F+ETSA  +TNVE AF  +   I   ++++  ++ S G
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSAG 184          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.165e-44
Identity = 95/208 (45.67%), Postives = 128/208 (61.54%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCC 725
            EYDYLFKL+LIGDS VGKS LL RF  + +     STIGV+F  R++  D K +K QIWDTAGQER+R ITS+YYRGA G ++VYD T   +F NV +WL E+  + + ++  +LIGNK D+     VSTE G+A A++  + F+ETSA D+ NVE AF  +  +I K +  +   A       T+  KG+ I   +        GCC
Sbjct:    4 EYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQ-TNANKTSGPGTVQMKGQPIQQNNG-------GCC 203          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.066e-43
Identity = 85/180 (47.22%), Postives = 121/180 (67.22%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNG 644
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + F+ETSA  + NVE AF  +   I   ++++  ++ S G
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAG 184          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.066e-43
Identity = 85/172 (49.42%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKR 620
            YDYLFKL+LIGDSGVGK+  L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W+R + EH  P++  M++GNK D      VS E G+  A    + FMETSA    N+ENAF  +   I   + K+
Sbjct:    5 YDYLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDIKAKMDKK 176          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.376e-43
Identity = 84/180 (46.67%), Postives = 121/180 (67.22%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNG 644
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + F+E SA  + NVE AF  +   I   ++++  ++ S+G
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRKMNDSNSSG 184          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 2.376e-43
Identity = 86/182 (47.25%), Postives = 124/182 (68.13%), Query Frame = 3
Query:  102 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGSNGT 647
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K++K QIWDTAGQER+R ITS+YYRGA G ++VYDVT H +F NV +W++E++ +   ++  +L+GNK DL     V T   + +A+   + F+ETSA  + NVE AF  + ++I K+  +  ++  +N T
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKL--QGGIQPNNNST 183          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 4.052e-43
Identity = 88/195 (45.13%), Postives = 126/195 (64.62%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF----TEVLTQIYKIVSKRAVEAGSNGTASTLPSKGET 677
            YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + FMETSA    NVENAF     ++  ++ K +   + +  S+G   T+  +  T
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSSHGVKITVEQQKRT 199          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 4.052e-43
Identity = 88/195 (45.13%), Postives = 126/195 (64.62%), Query Frame = 3
Query:  105 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAF----TEVLTQIYKIVSKRAVEAGSNGTASTLPSKGET 677
            YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + FMETSA    NVENAF     ++  ++ K +   + +  S+G   T+  +  T
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSSHGVKITVEQQKRT 199          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.293e-43
Identity = 92/215 (42.79%), Postives = 134/215 (62.33%), Query Frame = 3
Query:   99 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGR-WLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVL----TQIYKIVSKRAVEAGSNGTASTLPSKGETINVKDDSSVLKRIGCCS 728
            +EYDYLFK+++IGDSG GKS+LL RF  N ++    STIGV+F  ++++IDN  +K QIWDTAGQER+R ITS YYRGA G + VYDVT   +F ++   WL+++ ++   N+  +LIGNK DL     VS ++ K  AEQ ++ ++E SA   +NVE AFT +      ++ +  S       S  TAS +P+     +   +SSV K++   S
Sbjct:    2 KEYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYPSNAPASTVSLNTASKVPTNRGLTDSCQESSVFKKMNFSS 216          
BLAST of CX290269 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.293e-43
Identity = 89/174 (51.15%), Postives = 118/174 (67.82%), Query Frame = 3
Query:   78 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSALDATNVENAFTEVLTQI 599
            M+   PD  YDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GNK+DL     V     K +A+Q  + F+ETSA +ATNVE AF  +  +I
Sbjct:    1 MSTMNPD--YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEI 172          
The following BLAST results are available for this feature:
BLAST of CX290269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_PONAB2.806e-4447.78Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RABD1_ARATH8.165e-4445.67Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB8B_HUMAN1.066e-4347.22Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8A_CHICK1.066e-4349.42Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB8B_BOVIN2.376e-4346.67Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RAB1B_DICDI2.376e-4347.25Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB8A_RAT4.052e-4345.13Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE4.052e-4345.13Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB1_THEPA5.293e-4342.79Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB1A_LYMST5.293e-4351.15Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]

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Properties
Property NameValue
Genbank descriptionC02022D04SK IF1 Citrus clementina cDNA clone C02022D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290269 ID=CX290269; Name=CX290269; organism=Citrus clementina; type=EST; length=735bp
GTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCTTAGTTACAAG
TGAACAGTGACACATACACCTATATAAATGGCGGGTTACAAGCCTGATGA
GGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGGGACTCAGGCGTTG
GTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTTTAATTTGGAA
TCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTTTGAGGATTGA
TAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGCCAAGAAAGGT
ACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGGTGCTTTGCTT
GTATACGATGTAACACGACATGCTACATTTCAGAATGTTGGAAGGTGGTT
GAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTCATGCTCATTG
GCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAACTGAGGATGGG
AAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGACTTCCGCATT
GGATGCAACCAATGTGGAAAATGCTTTTACTGAGGTTCTTACTCAGATAT
ACAAGATCGTGAGCAAGAGAGCAGTTGAAGCAGGCAGCAATGGAACTGCT
TCCACACTTCCATCTAAAGGAGAGACGATAAATGTCAAAGACGATTCATC
CGTTCTAAAGAGAATTGGATGCTGCTCAACTAGGG
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