CX292162

Overview
NameCX292162
Unique NameCX292162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH602_PROMA (60 kDa chaperonin 2 OS=Prochlorococcus marinus GN=groL2 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.024e-67
Identity = 127/245 (51.84%), Postives = 178/245 (72.65%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LV++++++A+PI   + I    TI+AGND+ +G MIADA+DKVG +GV+                GM  D+GYISP F T+ E++    +   +L+TD KI  ++D++P+LE+  +   PLLI+A D+  EALATLVVN+LRG+LNVAA+KAPGF
Sbjct:   36 NVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLRNVAAGANAITLKKGIDKATDFLVKKIQEQAKPISDSNAIAQCGTIAAGNDEEVGQMIADAMDKVGKEGVISLEEGKSMETELEVTEGMRFDKGYISPYFATDTERMEAVLDEPYILLTDKKIGLVQDLVPVLEQIAKTGKPLLIVAEDIEKEALATLVVNRLRGVLNVAAVKAPGF 280          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH602_ACAM1 (60 kDa chaperonin 2 OS=Acaryochloris marina (strain MBIC 11017) GN=groL2 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.024e-67
Identity = 130/245 (53.06%), Postives = 177/245 (72.24%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVL++ FG+P++VNDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K G+ +V +GAN +SLKRGI+K    LVE++ + AR +E    I  V TISAGNDD +G MIA+A+DKVG +GV+                GM  ++GYISP F T+ E++    +   +L+TD KI+ ++D++P+LE+  +   PLL+IA D+  EALATLVVN+LRG+LNVAA+KAPGF
Sbjct:   36 NVVLEKKFGAPQIVNDGVTIAKEIELEDNIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKEGMRNVVAGANAISLKRGIEKAAGFLVEKIAENARSVEDSTAIAQVGTISAGNDDEVGQMIANAMDKVGKEGVISLEEGKSMTTELEVTEGMRFEKGYISPYFATDTERMEAVLDEPYILLTDKKITLVQDLVPVLEQAARAGKPLLVIAEDIEKEALATLVVNRLRGVLNVAAVKAPGF 280          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH601_PROMT (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL2A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 4.024e-67
Identity = 128/245 (52.24%), Postives = 176/245 (71.84%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LVE+++  ++PI   + I    TI+AGND+ +G MIADA+DKVG +GV+                GM  D+GYISP F T+ E++    +   +L+TD KI  ++D++P+LE+  +   PLLIIA D+  EALATLVVN+LRG+LNVAA+KAPGF
Sbjct:   36 NVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLKNVAAGANAITLKKGIDKATEFLVEKIKDHSKPISDSNAIAQCGTIAAGNDEEVGKMIADAMDKVGKEGVISLEEGKSMTTELEVTEGMRFDKGYISPYFATDTERMEAVLDEPYILLTDKKIGLVQDLVPVLEQVAKTGKPLLIIAEDIEKEALATLVVNRLRGVLNVAAVKAPGF 280          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_LEPIC (60 kDa chaperonin OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=groL PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.256e-67
Identity = 130/245 (53.06%), Postives = 175/245 (71.43%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+D+ FG+P +  DGVT+A+ IEL DP+EN GA +++EV++KTND AGDGTTTA++LA+ II  GL +VT+GANP+SLK+GIDK V   VE ++KRA  IE + DI  VA+ISA ND+ IG +IADA+DKVG DGV+                GM+ DRGYISP  VT+ E ++    +  +L+ D KIS++KD+I +LEK  Q   PL+II+ +V GEALAT+VVN LR  ++  A+KAPGF
Sbjct:   36 NVVIDKKFGAPTITKDGVTVAKEIELEDPLENMGAQMVKEVSTKTNDVAGDGTTTATILAQSIINEGLKNVTAGANPMSLKKGIDKAVTAAVESIQKRAVKIENKKDIANVASISANNDNTIGNLIADAMDKVGKDGVITVEEAKSIETTLDVVEGMQFDRGYISPYMVTDAESMVATLNDPFILIYDKKISSMKDLIHILEKVAQAGKPLVIISEEVEGEALATIVVNTLRKTISCVAVKAPGF 280          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_ANOFW (60 kDa chaperonin OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=groL PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.256e-67
Identity = 132/245 (53.88%), Postives = 177/245 (72.24%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVL++ FGSP + NDGVTIA+ IEL DP EN GA L+ EVASKTND AGDGTTTA+VLA+ +I+ GL +VT+GANP+ +++GI+K V   VEEL+  ++PIEG+D I  VA ISA  D+ +G +IA+A+++VG DGV+                GM+ DRGY+SP  +T+ +K+    EN  +L+TD K+S+I++++P+LE+  Q   PLLIIA DV GEALATLVVNKLRG     A+KAPGF
Sbjct:   36 NVVLEKKFGSPLITNDGVTIAKEIELEDPFENMGAKLVAEVASKTNDVAGDGTTTATVLAQAMIREGLKNVTAGANPMGIRKGIEKAVAVAVEELKAISKPIEGKDSIAQVAAISAA-DEEVGQLIAEAMERVGKDGVITLEESKGFTTELDVVEGMQFDRGYVSPYMITDSDKMEAVLENPYILITDKKVSSIQELLPVLEQVVQQGKPLLIIAEDVEGEALATLVVNKLRGTFTAVAVKAPGF 279          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_ACICJ (60 kDa chaperonin OS=Acidiphilium cryptum (strain JF-5) GN=groL PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.256e-67
Identity = 129/245 (52.65%), Postives = 174/245 (71.02%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+++ FGSP++  DGVT+A+ IELAD  EN GA ++REVASKTND AGDGTTTA+VLA+ I++ G  +V +G NP+ LKRGIDK V+ +V+EL+KR + I    +   V TISA  +  IG MI++A+ KVG +GV+                GM+ DRGY+SP F+TNPEK++ + +N  +L+ + K+S ++ ++PLLE   Q   PLLIIA DV GEALATLVVNKLRG L +AA+KAPGF
Sbjct:   37 NVVIEKSFGSPRITKDGVTVAKEIELADKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDKAVNAIVDELKKRTKKITTPSETAQVGTISANGEAEIGKMISEAMQKVGNEGVITVEEAKGIQTELDVVEGMQFDRGYVSPYFITNPEKMVADLDNPYILIHEKKLSGLQPMLPLLESIVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH602_SYNAS (60 kDa chaperonin 2 OS=Syntrophus aciditrophicus (strain SB) GN=groL2 PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.256e-67
Identity = 127/245 (51.84%), Postives = 178/245 (72.65%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NV++D+ FG+P V  DGVT+A+ +EL D  EN GA ++REVASKT+D AGDGTTTA++LA+ I + G  +V +G+NP+ +KRGI+K V  +V EL+  ++P + + +I  V TISA ND+ IG +IA+A+ KVG +GV+                GM+ DRGY+SP FVTNPEK+ V  E+A +L+ + KIS +KD++P+LE+  ++  PLLIIA D+ GEALATLVVNK+RG L+VAA+KAPGF
Sbjct:   37 NVIIDKSFGAPTVTKDGVTVAKEVELEDKFENMGAQMVREVASKTSDVAGDGTTTATILAQAIYREGAKTVAAGSNPMDVKRGIEKAVAAVVTELKNISKPTKDQKEIAQVGTISANNDETIGNIIAEAMGKVGKEGVITVEEAKGLETELEIVEGMQFDRGYLSPYFVTNPEKMEVSLEDALILIYEKKISGMKDLLPILEQIAKMGRPLLIIAEDIEGEALATLVVNKIRGTLHVAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH602_ROSS1 (60 kDa chaperonin 2 OS=Roseiflexus sp. (strain RS-1) GN=groL2 PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.256e-67
Identity = 136/245 (55.51%), Postives = 173/245 (70.61%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NV +D+ FG+P V +DGVT+A+ IEL DP EN GA L+ EVA+KTND  GDGTTTA+VLA+ I+  GL  V +GANP+ +KRG+DK V  +V EL+  A P+  R DI  VA ISA  D  IG +IA+ ++KVG DGV+                GM+IDRGYISP FVTNPE++  E E+  +L+TD KIS+I+DI+P+LEK  Q+   L+IIA DV GEALATLVVNKLRG +N  A+KAPGF
Sbjct:   36 NVSIDKKFGAPTVTHDGVTVAKEIELKDPFENMGARLLVEVATKTNDVVGDGTTTATVLAQSIVNEGLKMVAAGANPMLIKRGLDKAVEAVVAELKSVAIPVRDRADIAHVAAISAA-DSEIGDLIAEVMEKVGKDGVITVEESKGIAFEKEYTEGMQIDRGYISPYFVTNPERMEAELEDPYILITDKKISSIQDILPVLEKALQVTKNLVIIAEDVDGEALATLVVNKLRGTINALAVKAPGF 279          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH602_PROMT (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL2A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.256e-67
Identity = 132/245 (53.88%), Postives = 180/245 (73.47%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+++ FG+P +VNDGVTIA+ I+L DP EN GA LI +VASKT + AGDGTTTA+VLA+ +++ GL +  +GA+P+ L+RG++K V  +V++L+K+++ + G D IK VAT+SAG D+ IG+MIADAIDKV  DGV+                GM  DRGY SP FVT+ ++LI EFEN  +L+TD KIS+I D+IP+LE   +   PL+I+A +V GEALATLVVNK RG+L VAA++AP F
Sbjct:   36 NVVIEKKFGAPDIVNDGVTIAKEIDLEDPFENIGAKLIEQVASKTKEKAGDGTTTATVLAQFMVQEGLRNTAAGASPIELRRGMEKAVAQIVDDLKKKSKSVSG-DAIKQVATVSAGGDEEIGSMIADAIDKVSFDGVITVEESKSLATELDITEGMAFDRGYSSPYFVTDEDRLICEFENPSILITDKKISSIADLIPVLETVQKNGTPLIILAEEVEGEALATLVVNKNRGVLQVAAVRAPSF 279          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH602_PROM1 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL1A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.256e-67
Identity = 128/245 (52.24%), Postives = 176/245 (71.84%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVL++ FG+P+++NDGVTIA+ IEL D +EN G ALIR+ ASKTND+AGDGTTTA+VLA  ++K GL +V +GAN ++LK+GIDK    LVE+++  ++PI   + I    TI+AGND+ +G MIADA+DKVG +GV+                GM  D+GYISP F T+ E++    +   +L+TD KI  ++D++P+LE+  +   PLLIIA D+  EALATLVVN+LRG+LNVAA+KAPGF
Sbjct:   36 NVVLEKKFGAPQIINDGVTIAKEIELEDHIENTGVALIRQAASKTNDAAGDGTTTATVLAHAMVKAGLKNVAAGANAITLKKGIDKATDFLVEKIKDHSKPISDSNAIAQCGTIAAGNDEEVGKMIADAMDKVGKEGVISLEEGKSMTTELEVTEGMRFDKGYISPYFATDTERMEAVLDEPYILLTDKKIGLVQDLVPVLEQVAKTGKPLLIIAEDIEKEALATLVVNRLRGVLNVAAVKAPGF 280          
The following BLAST results are available for this feature:
BLAST of CX292162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_PROMA4.024e-6751.8460 kDa chaperonin 2 OS=Prochlorococcus marinus GN=... [more]
CH602_ACAM14.024e-6753.0660 kDa chaperonin 2 OS=Acaryochloris marina (strai... [more]
CH601_PROMT4.024e-6752.2460 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_LEPIC5.256e-6753.0660 kDa chaperonin OS=Leptospira interrogans serogr... [more]
CH60_ANOFW5.256e-6753.8860 kDa chaperonin OS=Anoxybacillus flavithermus (s... [more]
CH60_ACICJ5.256e-6752.6560 kDa chaperonin OS=Acidiphilium cryptum (strain ... [more]
CH602_SYNAS5.256e-6751.8460 kDa chaperonin 2 OS=Syntrophus aciditrophicus (... [more]
CH602_ROSS15.256e-6755.5160 kDa chaperonin 2 OS=Roseiflexus sp. (strain RS-... [more]
CH602_PROMT5.256e-6753.8860 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_PROM15.256e-6752.2460 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]

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Properties
Property NameValue
Genbank descriptionC04011C04SK FlavFr1 Citrus clementina cDNA clone C04011C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292162 ID=CX292162; Name=CX292162; organism=Citrus clementina; type=EST; length=736bp
GAAATGTTGTTCTGGATGAATTTGGAAGTCCGAAAGTGGTTAATGATGGA
GTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGG
TGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTG
ATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGA
CTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGAT
TGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGC
CTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGG
AATGATGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGG
TCCTGATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAGACTACTG
TTGAAGTTGAGGAAGGAATGGAGATTGACAGGGGTTACATCTCTCCTCAG
TTTGTCACAAACCCTGAGAAATTAATTGTTGAATTTGAGAATGCTAGAGT
GCTGGTCACGGATCANAAAATTTCAGCAATAAAGGATATAATTCCCTTGT
TAGAGAAGACCACACAATTGAGAGCACCATTGCTTATAATTGCTGANGAT
GTCACAGGAGAGGCTTTGGCTACGTTAGTCGTCAACAAGCTCAGGGGCAT
CCTTAATGTTGCTGCCATTAAAGCTCCTGGTTTTGG
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