CX292162
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1) HSP 1 Score: 404.06 bits (1037), Expect = 4.107e-112 Identity = 213/244 (87.30%), Postives = 223/244 (91.39%), Query Frame = 3 Query: 3 NVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734 NVVLDEFGSPKVVN+GVTIARAIEL DPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVS+KRGIDKTV GL+EELEK+ARP++GRDDIKAVA+ISAGND+LIGTMIADAIDKVGPDGVL GMEIDRGYISPQFVTNPEKLI EFENARVLVTD KI+AIKDIIPLLEKTTQLRAPLLIIA DVTGEALATLVVNK+RGILNVAAIKAPGF Sbjct: 25 NVVLDEFGSPKVVNEGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKRGIDKTVQGLIEELEKKARPVKGRDDIKAVASISAGNDELIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLICEFENARVLVTDQKITAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKMRGILNVAAIKAPGF 268
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2) HSP 1 Score: 394.045 bits (1011), Expect = 4.250e-109 Identity = 207/244 (84.84%), Postives = 218/244 (89.34%), Query Frame = 3 Query: 3 NVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734 NVVLDEFGSPKVVNDGVTIARAIEL D MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV L+EELEKRARP++G DIKAVATISAGND+L+GTMIADAIDKVGPDGVL GMEIDRGYISPQFVTNPEKL+VEFENARVL+TD KI+AIKDIIP+LEKTTQLRAPLLIIA DVTGEALATLVVNKLRG+LNV A+KAPGF Sbjct: 42 NVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRARPVKGGSDIKAVATISAGNDELVGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLLVEFENARVLITDQKITAIKDIIPILEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGVLNVVAVKAPGF 285
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2) HSP 1 Score: 393.275 bits (1009), Expect = 7.249e-109 Identity = 208/244 (85.25%), Postives = 219/244 (89.75%), Query Frame = 3 Query: 3 NVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734 NVVLDEFGSPKVVNDGVTIARAIEL DPMENAGAALIREVASKTNDSAGDGTTTAS+LAREIIKLGLL+VTSGANPVS+K+GIDKTV LVEELEK ARP++G DDIKAVATISAGND+LIG MIA+AIDKVGPDGVL GMEIDRGYISPQFVTNPEK IVEFENARVL+TD KISAIKDIIPLLEKTTQLRAPLLII+ D+TGEALATLVVNKLRGILNVAAIKAPGF Sbjct: 83 NVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASILAREIIKLGLLNVTSGANPVSIKKGIDKTVAALVEELEKLARPVKGGDDIKAVATISAGNDELIGKMIAEAIDKVGPDGVLSIESSNSFETTVEVEEGMEIDRGYISPQFVTNPEKSIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIISEDITGEALATLVVNKLRGILNVAAIKAPGF 326
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2) HSP 1 Score: 392.889 bits (1008), Expect = 9.468e-109 Identity = 204/244 (83.61%), Postives = 220/244 (90.16%), Query Frame = 3 Query: 3 NVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734 NVVLDEFGSPKVVNDGVTIARAIEL + MENAGAALIREVASKTNDSAGDGTTTAS+LAREIIK GLLSVTSGANPVSLKRGIDKTV GL+EEL+K+ARP++GRDDI+AVA+ISAGNDDLIG+MIADAIDKVGPDGVL GMEIDRGYISPQFVTNPEKL+ EFENARVL+TD KI+AIKDIIP+LEKTTQLRAPLLIIA DVTGEALATLVVNKLRG+LNV A+KAPGF Sbjct: 82 NVVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKARPVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLLAEFENARVLITDQKITAIKDIIPILEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGVLNVVAVKAPGF 325
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 388.267 bits (996), Expect = 2.332e-107 Identity = 205/244 (84.02%), Postives = 216/244 (88.52%), Query Frame = 3 Query: 3 NVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734 NVVLDEFGSPKVVNDGVTIARAIEL D MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV L+EELEKR+RP++G DIKAVATISAGND+LIG MIADAIDKVGPDGV GMEIDRGYISPQFVTNPEKL+VEFENARVL+TD KI+AIKDIIP+LEKTTQLRAPLLIIA DVTGEALATLVVNKLRG+LNV A+KAPGF Sbjct: 81 NVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRSRPVKGGRDIKAVATISAGNDELIGAMIADAIDKVGPDGVSPIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLLVEFENARVLITDQKITAIKDIIPILEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGVLNVVAVKAPGF 324
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1) HSP 1 Score: 377.096 bits (967), Expect = 5.376e-104 Identity = 196/244 (80.33%), Postives = 216/244 (88.52%), Query Frame = 3 Query: 3 NVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734 NVVLDE+G+PKVVNDGVTIARAIELA+PMENAGAALIREVASKTNDSAGDGTTTA VLAREIIKLG+LSVTSGANPVSLK+GIDKTV GL+EELE++ARP++G DIKAVA+ISAGND+LIG MIADAIDKVGPDGVL GMEIDRGYISPQFVTN EK IVEFENARVL+TD KI++IK+IIPLLE+TTQLR PL I+A D+TGEALATLVVNKLRGI+NVAAIKAP F Sbjct: 38 NVVLDEYGNPKVVNDGVTIARAIELANPMENAGAALIREVASKTNDSAGDGTTTACVLAREIIKLGILSVTSGANPVSLKKGIDKTVQGLIEELERKARPVKGSGDIKAVASISAGNDELIGAMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEIDRGYISPQFVTNLEKSIVEFENARVLITDQKITSIKEIIPLLEQTTQLRCPLFIVAEDITGEALATLVVNKLRGIINVAAIKAPSF 281
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 325.479 bits (833), Expect = 1.856e-88 Identity = 168/245 (68.57%), Postives = 203/245 (82.86%), Query Frame = 3 Query: 3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734 NVVL++ FG P+V+NDGV+I RAIEL DP+ENAGA LI+EVA +TND+AGDGTTTASVLARE+I GL SVT+GANP+++KRG+DKT LV +L++ A+P++GRDDIK VA+ISAGND+ IG MIADA+DKVG +GVL GMEIDRGYISPQFVTN E+L+VE++N RVLVTD KI AI+DIIP+LE+ T+L APLLIIA DV+GEALATLVVNKLRG+LNV AIKAPGF Sbjct: 70 NVVLEQKFGVPQVINDGVSIRRAIELKDPVENAGAQLIKEVAGRTNDAAGDGTTTASVLAREMIHYGLQSVTAGANPIAVKRGLDKTAEYLVAKLKEHAKPVKGRDDIKNVASISAGNDNAIGEMIADALDKVGSNGVLSIETSNSTETVVEVQEGMEIDRGYISPQFVTNQERLLVEYDNCRVLVTDQKIDAIRDIIPILEQVTRLNAPLLIIAEDVSGEALATLVVNKLRGVLNVCAIKAPGF 314
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1) HSP 1 Score: 285.034 bits (728), Expect = 2.780e-76 Identity = 145/245 (59.18%), Postives = 192/245 (78.37%), Query Frame = 3 Query: 3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734 NVVL++ FG+P+++NDGVTIA+ +EL DP+ENAGA L+REVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANPV+L++GIDKT+ LV+E+E +++P+ G D I VATISAGND +G MIA A+DKVG DGV+ GM+IDRGYISP FVT+ E+++ E ENAR+L+ + KIS+++D++ +LE+ + PLLIIA D+ GEALATLVVNKLRG+LNV AIKAPGF Sbjct: 36 NVVLEKKFGAPQIINDGVTIAKEVELEDPLENAGAQLMREVASKTNDVAGDGTTTATVLAQALIREGLKNVAAGANPVALRKGIDKTIDALVKEIEAKSKPVAG-DAIAQVATISAGNDTEVGQMIAQAMDKVGKDGVITVEESKSLATEMEIVEGMQIDRGYISPYFVTDAERMVAEIENARLLIVNKKISSLQDLVGILEQVARAGQPLLIIAEDLEGEALATLVVNKLRGVLNVVAIKAPGF 279
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1) HSP 1 Score: 281.567 bits (719), Expect = 3.074e-75 Identity = 140/245 (57.14%), Postives = 188/245 (76.73%), Query Frame = 3 Query: 3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734 NVVL++ FG+P++VNDGVTIA+ IELADP+EN GA L+REVASKTND AGDGTTTA++LA+ +++ GL ++++GANPV+L+RGI+KT LVE++ A+P+EGR I VATISAGND +G MIA A+D VG DGV+ GM+ DRGYISP FVT+ E+++ E+ENA +L+T KIS+++D++P+LE+ + PLL+IA DV GEALATLVVN+LRG+LN A+KAP F Sbjct: 36 NVVLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMREVASKTNDVAGDGTTTATILAQSMVREGLKNISAGANPVALRRGIEKTTAYLVEQIAAHAKPVEGRKTIAEVATISAGNDSEVGEMIAKAMDAVGRDGVITVEESKSLETELDVVEGMQFDRGYISPYFVTDSERMVAEYENAYLLITSNKISSLQDLVPILERVAREGRPLLVIAEDVEGEALATLVVNRLRGVLNAVAVKAPAF 280
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2) HSP 1 Score: 280.411 bits (716), Expect = 6.849e-75 Identity = 144/245 (58.78%), Postives = 187/245 (76.33%), Query Frame = 3 Query: 3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734 NV+L++ +G+P++VNDG+T+A+ IEL DP+EN GA LI+EVA+KT D AGDGTTTA+VL + +IK GL +V +G+NPVSLKRGIDKT LV E+ K A+P+EG I VAT+SAGND+ +G MIA A++KV DGV+ GM+IDRGYISP F+TN E+ VE EN R+L+TD KIS+I++++P+LEK +L PLLIIA DV G+ALATLVVNK RG+L+VAAIKAPGF Sbjct: 36 NVLLEKKYGTPQIVNDGITVAKEIELEDPLENTGARLIQEVAAKTKDVAGDGTTTATVLVQALIKEGLKNVAAGSNPVSLKRGIDKTTEALVAEIAKVAKPVEG-SAIAQVATVSAGNDEEVGAMIAQAVEKVTKDGVITVEESKSLTTELDVVEGMQIDRGYISPYFITNNERQTVELENVRILITDKKISSIQELVPVLEKVARLGQPLLIIAEDVEGDALATLVVNKARGVLSVAAIKAPGF 279 The following BLAST results are available for this feature:
BLAST of CX292162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX292162 ID=CX292162; Name=CX292162; organism=Citrus clementina; type=EST; length=736bpback to top |