CX292162

Overview
NameCX292162
Unique NameCX292162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_SHIF8 (60 kDa chaperonin OS=Shigella flexneri serotype 5b (strain 8401) GN=groL PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 129/245 (52.65%), Postives = 168/245 (68.57%), Query Frame = 3 
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA +D+ +G +IA+A+DKVG +GV+                GM+ DRGY+SP F+  PE   VE E+  +L+ D KIS I++++P+LE   +   PLLIIA DV GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGF 281
[Close]
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_SHIDS (60 kDa chaperonin OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=groL PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 129/245 (52.65%), Postives = 168/245 (68.57%), Query Frame = 3 
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA +D+ +G +IA+A+DKVG +GV+                GM+ DRGY+SP F+  PE   VE E+  +L+ D KIS I++++P+LE   +   PLLIIA DV GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGF 281
[Close]
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_SHIBS (60 kDa chaperonin OS=Shigella boydii serotype 4 (strain Sb227) GN=groL PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 129/245 (52.65%), Postives = 168/245 (68.57%), Query Frame = 3 
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA +D+ +G +IA+A+DKVG +GV+                GM+ DRGY+SP F+  PE   VE E+  +L+ D KIS I++++P+LE   +   PLLIIA DV GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGF 281
[Close]
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_SHIB3 (60 kDa chaperonin OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=groL PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 129/245 (52.65%), Postives = 168/245 (68.57%), Query Frame = 3 
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA +D+ +G +IA+A+DKVG +GV+                GM+ DRGY+SP F+  PE   VE E+  +L+ D KIS I++++P+LE   +   PLLIIA DV GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGF 281
[Close]
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_SERP5 (60 kDa chaperonin OS=Serratia proteamaculans (strain 568) GN=groL PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 128/245 (52.24%), Postives = 169/245 (68.98%), Query Frame = 3 
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+K + P      I  V TISA +D+ +G +IA+A++KVG +GV+                GM+ DRGY+SP F+  PE   +E E+  +L+ D KIS I++++P+LE   +   PLLIIA DV GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKKLSVPCSDSKAIAQVGTISANSDETVGKLIAEAMEKVGKEGVITVEEGTGLQDELDVVEGMQFDRGYLSPYFINKPETGSIELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGF 281
[Close]
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_OCHA4 (60 kDa chaperonin OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=groL PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 126/245 (51.43%), Postives = 172/245 (70.20%), Query Frame = 3 
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+D+ FG+P++  DGV++A+ IEL D  EN GA ++REVASKTND+AGDGTTTA+VL + I++ G  +V +G NP+ LKRGID  V  +V EL  +A+ I   +++  V TISA  +  IG MIADA+ KVG +GV+                GM+ DRGY+SP FVTNPEK++ + E+A +L+ + K+S ++ ++P+LE   Q   PL+IIA DV GEALATLVVNKLRG L +AA+KAPGF
Sbjct:   37 NVVIDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMLREVASKTNDTAGDGTTTATVLGQAIVQEGAKAVAAGMNPMDLKRGIDLAVTEVVAELLGKAKKINTSEEVAQVGTISANGEAEIGKMIADAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQALLPVLEAVVQTSKPLVIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGF 281
[Close]
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_METRJ (60 kDa chaperonin OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=groL PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 125/245 (51.02%), Postives = 169/245 (68.98%), Query Frame = 3 
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+++ FG+P++  DGVT+A+ IELAD  EN GA ++REVASKTND AGDGTTTA+VLA+ I++ G   V +G NP+ LKRGID      V+++  RA+ +   D++  V TISA  D  IG MIA A+ KVG +GV+                GM+ DRGY+SP F+TN EK++ E E+  +L+ + K+S+++ ++P+LE   Q   PLLIIA D+ GEALATLVVNKLRG L VAA+KAPGF
Sbjct:   37 NVVIEKSFGAPRITKDGVTVAKEIELADKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVREGAKYVAAGINPMDLKRGIDLATQAAVKDIIARAKKVSTSDEVAQVGTISANGDKEIGEMIAHAMQKVGNEGVITVEEAKTAETELDVVEGMQFDRGYLSPYFITNAEKMVAELEDPYILIHEKKLSSLQAMLPVLEAVVQTGKPLLIIAEDIEGEALATLVVNKLRGGLKVAAVKAPGF 281
[Close]
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_ESCF3 (60 kDa chaperonin OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=groL PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 129/245 (52.65%), Postives = 168/245 (68.57%), Query Frame = 3 
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA +D+ +G +IA+A+DKVG +GV+                GM+ DRGY+SP F+  PE   VE E+  +L+ D KIS I++++P+LE   +   PLLIIA DV GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDTAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGF 281
[Close]
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_ENTIT (60 kDa chaperonin (Fragment) OS=Enterobacter intermedius GN=groL PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 129/245 (52.65%), Postives = 168/245 (68.57%), Query Frame = 3 
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA +D+ +G +IA+A+DKVG +GV+                GM+ DRGY+SP F+  PE   VE E+  +L+ D KIS I++++P+LE   +   PLLIIA DV GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIIAEGLKAVAAGMNPMDLKRGIDKAVVAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLEDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGF 281
[Close]
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_ECOUT (60 kDa chaperonin OS=Escherichia coli (strain UTI89 / UPEC) GN=groL PE=1 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 129/245 (52.65%), Postives = 168/245 (68.57%), Query Frame = 3 
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA +D+ +G +IA+A+DKVG +GV+                GM+ DRGY+SP F+  PE   VE E+  +L+ D KIS I++++P+LE   +   PLLIIA DV GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGF 281
The following BLAST results are available for this feature:
BLAST of CX292162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_SHIF87.104e-6452.6560 kDa chaperonin OS=Shigella flexneri serotype 5b... [more]
CH60_SHIDS7.104e-6452.6560 kDa chaperonin OS=Shigella dysenteriae serotype... [more]
CH60_SHIBS7.104e-6452.6560 kDa chaperonin OS=Shigella boydii serotype 4 (s... [more]
CH60_SHIB37.104e-6452.6560 kDa chaperonin OS=Shigella boydii serotype 18 (... [more]
CH60_SERP57.104e-6452.2460 kDa chaperonin OS=Serratia proteamaculans (stra... [more]
CH60_OCHA47.104e-6451.4360 kDa chaperonin OS=Ochrobactrum anthropi (strain... [more]
CH60_METRJ7.104e-6451.0260 kDa chaperonin OS=Methylobacterium radiotoleran... [more]
CH60_ESCF37.104e-6452.6560 kDa chaperonin OS=Escherichia fergusonii (strai... [more]
CH60_ENTIT7.104e-6452.6560 kDa chaperonin (Fragment) OS=Enterobacter inter... [more]
CH60_ECOUT7.104e-6452.6560 kDa chaperonin OS=Escherichia coli (strain UTI8... [more]

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Properties
Property NameValue
Genbank descriptionC04011C04SK FlavFr1 Citrus clementina cDNA clone C04011C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292162 ID=CX292162; Name=CX292162; organism=Citrus clementina; type=EST; length=736bp
GAAATGTTGTTCTGGATGAATTTGGAAGTCCGAAAGTGGTTAATGATGGA
GTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGG
TGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTG
ATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGA
CTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGAT
TGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGC
CTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGG
AATGATGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGG
TCCTGATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAGACTACTG
TTGAAGTTGAGGAAGGAATGGAGATTGACAGGGGTTACATCTCTCCTCAG
TTTGTCACAAACCCTGAGAAATTAATTGTTGAATTTGAGAATGCTAGAGT
GCTGGTCACGGATCANAAAATTTCAGCAATAAAGGATATAATTCCCTTGT
TAGAGAAGACCACACAATTGAGAGCACCATTGCTTATAATTGCTGANGAT
GTCACAGGAGAGGCTTTGGCTACGTTAGTCGTCAACAAGCTCAGGGGCAT
CCTTAATGTTGCTGCCATTAAAGCTCCTGGTTTTGG
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