CX292162

Overview
NameCX292162
Unique NameCX292162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_CLOPE (60 kDa chaperonin OS=Clostridium perfringens GN=groL PE=3 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 129/245 (52.65%), Postives = 170/245 (69.39%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NV+LD+ FGSP + NDGVTIAR IEL D  EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ ++ GI   V   VEE++K ++P+ G++DI  VA ISA  D+ IG +IADA++KVG +GV+                GM+ DRGY+S   VT+ EK+    +N  VL+TD KIS I+D++PLLE+  Q    LLIIA D+ GEA+ TLVVNKLRG      +KAPGF
Sbjct:   36 NVILDKKFGSPLITNDGVTIAREIELEDAYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPILIRNGIKTAVEKAVEEIQKISKPVNGKEDIARVAAISAA-DEKIGKLIADAMEKVGNEGVITVEESKSMGTELDVVEGMQFDRGYVSAYMVTDTEKMEAVLDNPLVLITDKKISNIQDLLPLLEQIVQAGKKLLIIADDIEGEAMTTLVVNKLRGTFTCVGVKAPGF 279          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_CLOP1 (60 kDa chaperonin OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=groL PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 129/245 (52.65%), Postives = 170/245 (69.39%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NV+LD+ FGSP + NDGVTIAR IEL D  EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ ++ GI   V   VEE++K ++P+ G++DI  VA ISA  D+ IG +IADA++KVG +GV+                GM+ DRGY+S   VT+ EK+    +N  VL+TD KIS I+D++PLLE+  Q    LLIIA D+ GEA+ TLVVNKLRG      +KAPGF
Sbjct:   36 NVILDKKFGSPLITNDGVTIAREIELEDAYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPILIRNGIKTAVEKAVEEIQKISKPVNGKEDIARVAAISAA-DEKIGKLIADAMEKVGNEGVITVEESKSMGTELDVVEGMQFDRGYVSAYMVTDTEKMEAVLDNPLVLITDKKISNIQDLLPLLEQIVQAGKKLLIIADDIEGEAMTTLVVNKLRGTFTCVGVKAPGF 279          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_CLOB8 (60 kDa chaperonin OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=groL PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 128/245 (52.24%), Postives = 173/245 (70.61%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P + NDGV+IAR IEL DP EN GA L++EVA+KTND AGDGTTTA++LA+ II+ GL +VT+GANP+ ++ GI   V   VEE++K ++ ++G++DI  VA ISA  D+ +G +IADA++KVG +GV+                GM+ DRGY+SP   T+ EK+    EN  +L+TD KIS I++I+P+LE+  Q    LLIIA D+ GEA+ATLVVNKLRG     A+KAPGF
Sbjct:   36 NVVLDKKFGAPLITNDGVSIAREIELEDPYENMGAQLVKEVATKTNDVAGDGTTTATLLAQAIIREGLKNVTAGANPILIRTGIKMAVDKAVEEIQKISKQVDGKEDIARVAAISAA-DEEVGKLIADAMEKVGNEGVITIEESKSMGTELDVVEGMQFDRGYVSPYMATDTEKMEAVLENPYILITDKKISNIQEILPVLEQIVQSGKKLLIIAEDIEGEAMATLVVNKLRGTFTCVAVKAPGF 279          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_BURPP (60 kDa chaperonin OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=groL PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 125/245 (51.02%), Postives = 167/245 (68.16%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVL+  FG P V  DGV++A+ IEL D ++N GA +++EVASKT+D+AGDGTTTA+VLA+ I++ G+  V SG NP+ LKRGIDK V   +EEL K ++P     +I  V  ISA +D  IG  IA+A+DKVG +GV+                GM+ DRGY+SP F+ NP+K +   +N  VL+ D K+S I+D++P+LE+  +   PLLIIA DV GEALATLVVN +RGIL   A+KAPGF
Sbjct:   37 NVVLERSFGGPTVTKDGVSVAKEIELKDKLQNMGAQMVKEVASKTSDNAGDGTTTATVLAQSIVREGMKYVASGMNPMDLKRGIDKAVTAAIEELRKISKPCTTNKEIAQVGAISANSDSSIGDRIAEAMDKVGKEGVITVEDGKSLQDELDVVEGMQFDRGYLSPYFINNPDKQVAVLDNPFVLLHDKKVSNIRDLLPVLEQVAKAGRPLLIIAEDVEGEALATLVVNNIRGILKTVAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_BUCRM (60 kDa chaperonin OS=Buchnera aphidicola subsp. Rhopalosiphum maidis GN=groL PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 125/245 (51.02%), Postives = 168/245 (68.57%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA++LA+ I+  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA  D+ +G +IA+A++KVG DGV+                GM+ DRGY+SP F+  PE  +VE EN  +L+ D KIS +++++P+LE   +   PLLII+ D+ GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPSITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATLLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVISAVEELKNLSVPCSDSKAITQVGTISANADEKVGALIAEAMEKVGNDGVITVEEGTGLQNELEVVKGMQFDRGYLSPYFINKPETGVVELENPYILMADKKISNVREMLPILESVAKSGKPLLIISEDLEGEALATLVVNSMRGIVKVAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_BUCCC (60 kDa chaperonin OS=Buchnera aphidicola subsp. Cinara cedri GN=groL PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 126/245 (51.43%), Postives = 169/245 (68.98%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA++LA+ I+  GL +V +G NP+ LKRGIDK V   V+EL+K + P      I  V TISA  D+ +G++IA+A++KVG DGV+                GM+ DRGY+SP F+  PE  +VE EN  +L+ D KIS I++++P+LE   +   PLLII+ D+ GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGPPSITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATLLAQSIVNEGLKAVAAGMNPMDLKRGIDKAVIDAVDELKKLSVPCADSKAITQVGTISANADEKVGSLIAEAMEKVGNDGVITVEEGTGLQNELEVVKGMQFDRGYLSPYFINQPETGLVELENPYILMVDKKISNIRELLPILEAVAKSSKPLLIISEDLEGEALATLVVNSMRGIVKVAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH602_THEFY (60 kDa chaperonin 2 OS=Thermobifida fusca (strain YX) GN=groL2 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 129/245 (52.65%), Postives = 171/245 (69.80%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+D+ +G+P + NDGVT+AR +EL DP EN GA L++EVA+KTND+AGDGTTTA+VLA+ ++  GL SV +GA+P+ LKRGID     + E L  RAR I+ R DI  VAT SA  D  IG +IA+A DKVG DGV+                G++ D+GYISP FVT+P++     E+A +L+   KIS + +++PLLEK  Q + PLLIIA DV G+AL  LV+NK+RG L+VAA+KAPGF
Sbjct:   36 NVVIDKKWGAPTITNDGVTVAREVELEDPYENLGAQLVKEVATKTNDAAGDGTTTATVLAQALVNEGLRSVAAGASPILLKRGIDAAAQAVSETLLSRAREIDERGDIAYVATNSA-QDKQIGELIAEAFDKVGKDGVITVEESQTFGMDLEFTEGLQFDKGYISPYFVTDPDRQEAVLEDALILIHQGKISNLAELLPLLEKIVQTKKPLLIIAEDVEGDALGALVLNKMRGTLSVAAVKAPGF 279          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH602_BRAJA (60 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN=groL2 PE=2 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 128/245 (52.24%), Postives = 169/245 (68.98%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P++  DGVT+A+ IEL D  EN GA ++REVASK+ D+AGDGTTTA+VLA  I++ G  SV +G NP+ LKRGID  V  +V +L K ++ +   ++I  V TISA  D  IG  I+DA+ KVG +GV+                GM+ DRGYISP FVTN +K+ VE ++A VL+ + K+S + +++PLLE   Q   PL+IIA DV GEALATLVVN+LRG L VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAAAIVREGAKSVAAGMNPMDLKRGIDMAVEAVVADLVKNSKKVTSNEEIAQVGTISANGDAEIGKFISDAMKKVGNEGVITVEEAKSLETELEVVEGMQFDRGYISPYFVTNADKMRVEMDDAYVLINEKKLSQLNELLPLLEAVVQSGKPLVIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH601_KINRD (60 kDa chaperonin 1 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=groL1 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 131/245 (53.47%), Postives = 168/245 (68.57%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+D+ +G+P + NDGVTIAR +EL DP EN GA L +EVA+KTND AGDGTTTA+VLA+ ++  GL +V +GA P  LKRGID  V  + ++L   AR ++G+ DI  VATISA  D  +G ++ADA DKVG DGV+                GM+ D+GYISP FVT+ E+     E+A VLV   KIS ++D++PLLEK  +   PLLIIA DV GEAL+TLVVNK+RG  N  A+KAPGF
Sbjct:   36 NVVIDKKWGAPTITNDGVTIAREVELDDPYENLGAQLAKEVATKTNDVAGDGTTTATVLAQALVHEGLRNVAAGAAPSGLKRGIDAAVDAVSDQLLSMARDVDGKGDIAHVATISA-QDPAVGELLADAFDKVGKDGVITVEESSTTALELDFTEGMQFDKGYISPYFVTDAERQEAVLEDAYVLVHQGKISTVQDLLPLLEKVLKAAKPLLIIAEDVDGEALSTLVVNKIRGTFNAVAVKAPGF 279          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH601_ECOK1 (60 kDa chaperonin 1 OS=Escherichia coli O1:K1 / APEC GN=groL1 PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.104e-64
Identity = 129/245 (52.65%), Postives = 168/245 (68.57%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA +D+ +G +IA+A+DKVG +GV+                GM+ DRGY+SP F+  PE   VE E+  +L+ D KIS I++++P+LE   +   PLLIIA DV GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGF 281          
The following BLAST results are available for this feature:
BLAST of CX292162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CLOPE7.104e-6452.6560 kDa chaperonin OS=Clostridium perfringens GN=gr... [more]
CH60_CLOP17.104e-6452.6560 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH60_CLOB87.104e-6452.2460 kDa chaperonin OS=Clostridium beijerinckii (str... [more]
CH60_BURPP7.104e-6451.0260 kDa chaperonin OS=Burkholderia phytofirmans (st... [more]
CH60_BUCRM7.104e-6451.0260 kDa chaperonin OS=Buchnera aphidicola subsp. Rh... [more]
CH60_BUCCC7.104e-6451.4360 kDa chaperonin OS=Buchnera aphidicola subsp. Ci... [more]
CH602_THEFY7.104e-6452.6560 kDa chaperonin 2 OS=Thermobifida fusca (strain ... [more]
CH602_BRAJA7.104e-6452.2460 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN... [more]
CH601_KINRD7.104e-6453.4760 kDa chaperonin 1 OS=Kineococcus radiotolerans (... [more]
CH601_ECOK17.104e-6452.6560 kDa chaperonin 1 OS=Escherichia coli O1:K1 / AP... [more]

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Properties
Property NameValue
Genbank descriptionC04011C04SK FlavFr1 Citrus clementina cDNA clone C04011C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292162 ID=CX292162; Name=CX292162; organism=Citrus clementina; type=EST; length=736bp
GAAATGTTGTTCTGGATGAATTTGGAAGTCCGAAAGTGGTTAATGATGGA
GTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGG
TGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTG
ATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGA
CTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGAT
TGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGC
CTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGG
AATGATGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGG
TCCTGATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAGACTACTG
TTGAAGTTGAGGAAGGAATGGAGATTGACAGGGGTTACATCTCTCCTCAG
TTTGTCACAAACCCTGAGAAATTAATTGTTGAATTTGAGAATGCTAGAGT
GCTGGTCACGGATCANAAAATTTCAGCAATAAAGGATATAATTCCCTTGT
TAGAGAAGACCACACAATTGAGAGCACCATTGCTTATAATTGCTGANGAT
GTCACAGGAGAGGCTTTGGCTACGTTAGTCGTCAACAAGCTCAGGGGCAT
CCTTAATGTTGCTGCCATTAAAGCTCCTGGTTTTGG
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