CX292162

Overview
NameCX292162
Unique NameCX292162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_PECCC (60 kDa chaperonin (Fragment) OS=Pectobacterium carotovorum subsp. carotovorum GN=groL PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.212e-63
Identity = 128/245 (52.24%), Postives = 168/245 (68.57%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P +  DGV++AR IEL D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGIDK V   VEEL+  + P      I  V TISA +D+ +G MIA+A+DKVG +GV+                GM+ DRGY+SP F+  PE   VE E+  +L+ D KIS I++++P+LE   +   PL+I+A DV GEALATLVVN +RGI+ VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVIAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKMIAEAMDKVGKEGVITVEEGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLVIVAEDVEGEALATLVVNTMRGIVKVAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_GRATL (60 kDa chaperonin, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=groL PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.212e-63
Identity = 125/246 (50.81%), Postives = 178/246 (72.36%), Query Frame = 3
Query:    3 NVVLD-EFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAI-KDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVL+ +FG+P+++NDGVTIA+ IEL D  EN G ALIR+ ASKTND AGDGTTTA+VLA  I+K GL +V +GANP++LK+GI K V  +V ++ + ++PI    D+  + +IS+GND  +GTMIA+AI +VG +G++                GM+ D+G+ISP FVT+  ++ V  +N  +L+TD KI+ I ++++P+LEK T+   PLLIIA D+  EALAT++VNKLRGI+NV A++APGF
Sbjct:   36 NVVLERKFGAPQIINDGVTIAKEIELQDLAENTGVALIRQAASKTNDVAGDGTTTATVLAHAIVKQGLKNVAAGANPITLKKGIQKAVKFVVGKIAEYSKPICSMQDVTHIGSISSGNDVEVGTMIANAIQQVGKEGIISLEEGQSTSTELDIKEGMKFDKGFISPYFVTDTSRMEVIQDNPYILITDKKITLIQQELLPILEKVTKTGRPLLIIAEDIEKEALATIIVNKLRGIINVVAVRAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_DESAA (60 kDa chaperonin OS=Desulfatibacillum alkenivorans (strain AK-01) GN=groL PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.212e-63
Identity = 124/245 (50.61%), Postives = 174/245 (71.02%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+D+ +G+P V  DGVT+A+ IEL +  EN GA +++EVASKT+D+AGDGTTTA+VLAR I + G+  V +G NP+++KRGIDK     V+ L   ++P + + +I  V TISA  D+ IG +IA+A++KVG +GV+                GM+ DRGYISP FVT+ EK++   E+  +L+ + KIS +KD++PLLE+T ++  PLLI+A DV GEALATLVVN+LRG L +AA+KAPGF
Sbjct:   36 NVVIDKAWGAPTVTKDGVTVAKEIELENKFENMGAQMVKEVASKTSDTAGDGTTTATVLARAIYEEGMKLVVAGNNPMAIKRGIDKACEAAVKSLMNLSKPTKEQREIAQVGTISANTDETIGNIIAEAMNKVGKEGVITVEEAKSMDTTLDVVEGMQFDRGYISPYFVTDSEKMVCSLEDPYILIHEKKISNMKDLLPLLEQTAKMGKPLLIVAEDVEGEALATLVVNRLRGTLQIAAVKAPGF 280          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_CAUCR (60 kDa chaperonin OS=Caulobacter crescentus GN=groL PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.212e-63
Identity = 127/245 (51.84%), Postives = 171/245 (69.80%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+++ FG+P+   DGV++A+ IELAD  EN GA +IREVASKTND AGDGTTTA+VLA+ I++ GL SV +G NP+ LKRGIDK V   +E+++  ++ +    +I  V TISA  D  +G MIA A+DKVG +GV+                GM+ DRGY+SP F+TN +K+ V+ E   +L+ + K+S+++ ++P+LE   Q   PLLIIA DV GEALATLVVNKLRG L VAA+KAPGF
Sbjct:   37 NVVIEKSFGAPRTTKDGVSVAKEIELADKFENLGAQMIREVASKTNDKAGDGTTTATVLAQAIVQEGLKSVAAGMNPMDLKRGIDKAVAIAIEDIKTSSKKVTTNAEIAQVGTISANGDKEVGEMIAKAMDKVGNEGVITVEEAKTAETELDVVEGMQFDRGYLSPYFITNADKMEVQLEEPLILLFEKKLSSLQPLLPVLEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLRVAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH60_CAUCN (60 kDa chaperonin OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=groL PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.212e-63
Identity = 127/245 (51.84%), Postives = 171/245 (69.80%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+++ FG+P+   DGV++A+ IELAD  EN GA +IREVASKTND AGDGTTTA+VLA+ I++ GL SV +G NP+ LKRGIDK V   +E+++  ++ +    +I  V TISA  D  +G MIA A+DKVG +GV+                GM+ DRGY+SP F+TN +K+ V+ E   +L+ + K+S+++ ++P+LE   Q   PLLIIA DV GEALATLVVNKLRG L VAA+KAPGF
Sbjct:   37 NVVIEKSFGAPRTTKDGVSVAKEIELADKFENLGAQMIREVASKTNDKAGDGTTTATVLAQAIVQEGLKSVAAGMNPMDLKRGIDKAVAIAIEDIKTSSKKVTTNAEIAQVGTISANGDKEVGEMIAKAMDKVGNEGVITVEEAKTAETELDVVEGMQFDRGYLSPYFITNADKMEVQLEEPLILLFEKKLSSLQPLLPVLEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLRVAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH604_RHILO (60 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.212e-63
Identity = 125/245 (51.02%), Postives = 172/245 (70.20%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+D+ FG+P++  DGVT+A+ IEL D  EN GA ++REVASKTND AGDGTTTA+VLA+ I++ G  +V +G NP+ LKRGID  V  +V  L K A+ I+  +++  V TISA  D+ +G MIA+A+ KVG +GV+                GM+ DRGY+SP FVTN +K++ + E+A +L+ + K+S ++ ++P+LE   Q   PLLII+ DV GEALATLVVNKLRG L +AA+KAPGF
Sbjct:   37 NVVIDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQSIVQEGHKAVAAGMNPMDLKRGIDLAVSEVVAALGKAAKKIKTSEEVAQVGTISANGDESVGKMIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNADKMVADLEDAYILLHEKKLSNLQAMLPVLEAVVQTSKPLLIISEDVEGEALATLVVNKLRGGLKIAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH603_SYNAS (60 kDa chaperonin 3 OS=Syntrophus aciditrophicus (strain SB) GN=groL3 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.212e-63
Identity = 123/242 (50.83%), Postives = 170/242 (70.25%), Query Frame = 3
Query:    9 VLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            +   +G+P+V  DGVT+A+ IEL D  EN GA +++EVASKT+D AGDGTTTA+VLA+ I + G   V SG NP+SLKRGIDK V  +V+EL+KR++ I  + +I  + TISA ND  IG +I++A++KVG DGV+                GM+ DRGY+SP FVT+ EK+ V  ++  +L+ + KISA+KD++PLLE+  +   PLL++A D+ GEALATLVVNK+RG L   A+KAPGF
Sbjct:   40 IAKSWGAPQVTKDGVTVAKEIELEDKFENMGAQMVKEVASKTSDKAGDGTTTATVLAQAIYREGSKLVVSGMNPMSLKRGIDKGVALVVDELKKRSKTISDKKEIAQIGTISANNDATIGNIISEAMEKVGKDGVITVEEAKGMETELEIVEGMQFDRGYVSPYFVTDAEKMEVRLDDPYILLHEKKISAMKDMVPLLEQIAKTGKPLLLVAEDIEGEALATLVVNKMRGTLKCVAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH601_SINMW (60 kDa chaperonin 1 OS=Sinorhizobium medicae (strain WSM419) GN=groL1 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.212e-63
Identity = 126/245 (51.43%), Postives = 172/245 (70.20%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVV+D+ FG+P++  DGV++A+ IEL D  EN GA ++REVASKTND AGDGTTTA+VLA+ I++ G  +V +G NP+ LKRGID  V  +V++L  +A+ I   D++  V TISA  +  IG  IA+A+ KVG +GV+                GM+ DRGY+SP FVTNPEK++ + E+A +L+ + K+S ++ ++P+LE   Q   PLLIIA DV GEALATLVVNKLRG L +AA+KAPGF
Sbjct:   37 NVVIDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDLAVAEVVKDLLAKAKKINTSDEVAQVGTISANGEKQIGLDIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAYILLHEKKLSNLQAMLPVLEAVVQTGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH601_RHOPB (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL1 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.212e-63
Identity = 126/245 (51.43%), Postives = 169/245 (68.98%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ FG+P++  DGVT+A+ IEL D  EN GA ++REVASK+ D AGDGTTTA+VLA  I++ G  SV +G NP+ LKRGID  V  +V +L K ++ +   ++I  V TISA  D  IG  ++DA+ KVG +GV+                GM+ DRGYISP FVTN +K+ VEF++A +L+ + K+S + +++PLLE   Q   PL+I+A DV GEALATLVVN+LRG L VAA+KAPGF
Sbjct:   37 NVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADLAGDGTTTATVLAAAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNEEIAQVGTISANGDAEIGKFLSDAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEFDDAYILINEKKLSNLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGF 281          
BLAST of CX292162 vs. ExPASy Swiss-Prot
Match: CH601_NITHX (60 kDa chaperonin 1 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=groL1 PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.212e-63
Identity = 127/245 (51.84%), Postives = 169/245 (68.98%), Query Frame = 3
Query:    3 NVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDXKISAIKDIIPLLEKTTQLRAPLLIIAXDVTGEALATLVVNKLRGILNVAAIKAPGF 734
            NVVLD+ +G+P++  DGVT+A+ IEL D  EN GA ++REVASK+ D+AGDGTTTA+VLA  I+K G  SV +G NP+ LKRGID  V  +V +L + ++ +   ++I  V TIS+  D  IG  +ADA+ KVG +GV+                GM+ DRGYISP FVTN +K+ VE E+A VL+ + K+S + +++PLLE   Q   PL+IIA DV GEALATLVVN+LRG L VAA+KAPGF
Sbjct:   37 NVVLDKSYGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAAAIVKEGAKSVAAGMNPMDLKRGIDLAVEAVVADLVRNSKKVTSNEEIAQVGTISSNGDTEIGKFLADAMKKVGNEGVITVEEAKSLETELEIVEGMQFDRGYISPYFVTNADKMRVEMEDAYVLINEKKLSQLNELLPLLEAVVQSGKPLVIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGF 281          
The following BLAST results are available for this feature:
BLAST of CX292162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PECCC1.212e-6352.2460 kDa chaperonin (Fragment) OS=Pectobacterium car... [more]
CH60_GRATL1.212e-6350.8160 kDa chaperonin, chloroplastic OS=Gracilaria ten... [more]
CH60_DESAA1.212e-6350.6160 kDa chaperonin OS=Desulfatibacillum alkenivoran... [more]
CH60_CAUCR1.212e-6351.8460 kDa chaperonin OS=Caulobacter crescentus GN=gro... [more]
CH60_CAUCN1.212e-6351.8460 kDa chaperonin OS=Caulobacter crescentus (strai... [more]
CH604_RHILO1.212e-6351.0260 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=... [more]
CH603_SYNAS1.212e-6350.8360 kDa chaperonin 3 OS=Syntrophus aciditrophicus (... [more]
CH601_SINMW1.212e-6351.4360 kDa chaperonin 1 OS=Sinorhizobium medicae (stra... [more]
CH601_RHOPB1.212e-6351.4360 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH601_NITHX1.212e-6351.8460 kDa chaperonin 1 OS=Nitrobacter hamburgensis (s... [more]

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Properties
Property NameValue
Genbank descriptionC04011C04SK FlavFr1 Citrus clementina cDNA clone C04011C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX292162 ID=CX292162; Name=CX292162; organism=Citrus clementina; type=EST; length=736bp
GAAATGTTGTTCTGGATGAATTTGGAAGTCCGAAAGTGGTTAATGATGGA
GTAACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGG
TGCTGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTG
ATGGAACAACAACTGCATCAGTTCTTGCACGAGAAATAATTAAACTAGGA
CTCCTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGAT
TGATAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGC
CTATCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGG
AATGATGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTTGG
TCCTGATGGCGTCTTGTCAATCGAGTCATCATCATCATTTGAGACTACTG
TTGAAGTTGAGGAAGGAATGGAGATTGACAGGGGTTACATCTCTCCTCAG
TTTGTCACAAACCCTGAGAAATTAATTGTTGAATTTGAGAATGCTAGAGT
GCTGGTCACGGATCANAAAATTTCAGCAATAAAGGATATAATTCCCTTGT
TAGAGAAGACCACACAATTGAGAGCACCATTGCTTATAATTGCTGANGAT
GTCACAGGAGAGGCTTTGGCTACGTTAGTCGTCAACAAGCTCAGGGGCAT
CCTTAATGTTGCTGCCATTAAAGCTCCTGGTTTTGG
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