CX293823

Overview
NameCX293823
Unique NameCX293823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14246 contig Ccv1_Contig14246:72..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.962e-14
Identity = 45/149 (30.20%), Postives = 81/149 (54.36%), Query Frame = 3
Query:   21 MTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +T   ++L   + +E  ++    NL   +KE    ++++K +QSV  +IG+ L  +D    IV +++G  Y V   S +D+E L  G  V L   +  ++  LP E D  +  +  ++  ++SY  +GGL  Q +E+RE++ELPL + E
Sbjct:   40 LTTLERQLAHLQVMEDYIKLETRNL---EKELLHAQEEVKRIQSVPLVIGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGE 185          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.563e-14
Identity = 43/114 (37.72%), Postives = 67/114 (58.77%), Query Frame = 3
Query:  126 EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            E  ++ L+     +G +   +D+   IV ++ GP + V   S VDK KL  G  V+L+  TL+++  +  EVDP+V  M  E     SYS +GGL  Q++E++E+IELPL +PE
Sbjct:   95 EKIIEELRGDPLTVGNLEEIIDDNHAIVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPE 208          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.709e-14
Identity = 44/146 (30.14%), Postives = 80/146 (54.79%), Query Frame = 3
Query:   45 LQHKEIE----SRVRSVKENLRAA-KKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            L H E++    +++  V E  RA   +      +++  +Q     +G V+  +   +++VK +   +Y+V     V+ ++L +G RV L   +  + R LP +VDP+V  M+ E   + +Y  +GGL +QI+E+RE IELP+ +PE
Sbjct:   75 LDHLEVQIAKKTKILRVLEQKRAELNRRVRFLREEISIVQEPSSNVGVVVEKMGKMQVLVKTNPDGKYLVKVEPGVNYDELKAGVRVALRSDSYDVHRILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHPE 220          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.700e-13
Identity = 39/129 (30.23%), Postives = 72/129 (55.81%), Query Frame = 3
Query:   81 VKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            VK+  +  K+E  + ++++K +QSV  +IG+ +  +D    IV +++G  Y V   S +++E L     V L   +  ++  LP E D  +  +   +  +VSY+ +GG   Q +E+RE++ELPL + E
Sbjct:   51 VKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHE 179          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 8.243e-13
Identity = 48/154 (31.17%), Postives = 79/154 (51.30%), Query Frame = 3
Query:   24 TEYRKKLLQHKEIESRVRSVKENLR---AAKKEFNKTEDD---LKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            T  R KLL+ + I+  +    E +R     K +  K E++   +  L+     +G +   +D+   IV  S G  + V   S VDK++L  G  V+L+     ++  L  + DP+V  M  E     +Y+ +GGL  QI+E++ES+ELPL +PE
Sbjct:   55 TRCRLKLLKLERIKDYLMMEDEFIRNQERLKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPE 208          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.077e-12
Identity = 46/151 (30.46%), Postives = 79/151 (52.32%), Query Frame = 3
Query:   33 RKKLLQHKEIESRVRSVKE---NLRAAKKEFNKTEDD---LKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            R KLL+ + I+  +   +E   N    K +  + E++   +  L+     +G +   +D++  IV  + G  + V   S VDKE+L  G  V+L+     ++  L  + DP+V  M  E     +Y+ VGGL  QI+E++E++ELPL +PE
Sbjct:   62 RLKLLKSERIKDYLLMEQEFIQNQERLKPQEERQEEERAKVDELRGTPMAVGSLEEIIDDQHAIVSTNVGSEHYVNIMSFVDKEQLEPGCSVLLNHKNHAVIGVLSDDTDPMVSVMKLEKAPQETYADVGGLDQQIQEIKEAVELPLTHPE 212          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.406e-12
Identity = 45/154 (29.22%), Postives = 83/154 (53.90%), Query Frame = 3
Query:   24 TEYRKKLLQHKEIESRVRSVKE---NLRAAKKEFNKTEDD---LKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            T  R +LL+ + I   +   +E   N    K +  +T+++   +  ++     +G +   +D++  IV +++GP Y V   S VDK+ L  G  V+L    ++I+  L  + DP++  M  +     SY+ +GGL  QI+E++E++ELPL +PE
Sbjct:   63 TRCRLRLLKMQRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIV-STAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPLTHPE 215          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.406e-12
Identity = 45/144 (31.25%), Postives = 78/144 (54.17%), Query Frame = 3
Query:   36 KKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            KKL     +E  + S+ E  ++++   N  +  ++ L+     +G +   +D+   I+    G  Y V   S VDK+ L  G  V+L+    +++  L  E+DP+V  M  E   + +Y+ +GGL +QI+E++ES+ELPL NPE
Sbjct:   51 KKLAHLLSLEDNILSLCEPDKSSEGS-NSQKHVVEQLRGSPLSVGTLEEFVDDHHGIITTGVGLEYYVNIMSFVDKDLLEPGCTVLLNYKDNSVVGVLEGEMDPMVNVMKLEKAPSETYADIGGLEEQIQEIKESVELPLTNPE 193          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.398e-12
Identity = 47/154 (30.52%), Postives = 82/154 (53.25%), Query Frame = 3
Query:   24 TEYRKKLLQHKEIESRVRSVKENLRAAK--KEFNKTEDDLKS----LQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            T+ R KLL+ + I+  +   +E +R  +  K   + +++ +S    L+     +G +   +D+   IV  S G  + V   S VDK+ L  G  V+L+     ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE
Sbjct:   56 TQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPE 209          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.398e-12
Identity = 47/154 (30.52%), Postives = 82/154 (53.25%), Query Frame = 3
Query:   24 TEYRKKLLQHKEIESRVRSVKENLRAAK--KEFNKTEDDLKS----LQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            T+ R KLL+ + I+  +   +E +R  +  K   + +++ +S    L+     +G +   +D+   IV  S G  + V   S VDK+ L  G  V+L+     ++  L  + DP+V  M  E     +Y+ +GGL +QI+E++ES+ELPL +PE
Sbjct:   56 TQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPE 209          
The following BLAST results are available for this feature:
BLAST of CX293823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
PRS6B_CAEEL1.962e-1430.20Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS4_DICDI2.563e-1437.7226S protease regulatory subunit 4 homolog OS=Dicty... [more]
PRS8_ENCCU5.709e-1430.1426S protease regulatory subunit 8 homolog OS=Encep... [more]
PRS6B_ARATH3.700e-1330.2326S protease regulatory subunit 6B homolog OS=Arab... [more]
PRS4_DROME8.243e-1331.1726S protease regulatory subunit 4 OS=Drosophila me... [more]
PRS4_CAEEL1.077e-1230.46Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PRS4_SCHPO1.406e-1229.2226S protease regulatory subunit 4 homolog OS=Schiz... [more]
PRS4_ENCCU1.406e-1231.2526S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS4_RAT2.398e-1230.5226S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE2.398e-1230.5226S protease regulatory subunit 4 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC05001B03SK FlavSen1 Citrus clementina cDNA clone C05001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293823 ID=CX293823; Name=CX293823; organism=Citrus clementina; type=EST; length=469bp
CCGTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACTCCAG
CACAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGAGAGC
TGCAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTCAAA
GTGTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGAACGC
TTGATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCCGCAG
CAAAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTTGATA
TGACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCCGGTT
GTATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGGCTGT
GGGTGGTTTATCTGATCAGATCAGAGAATTAAGGGAATCTATTGAGCTAC
CTTTGATGAATCCTGAGCT
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