CX293823

Overview
NameCX293823
Unique NameCX293823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.696e-22
Identity = 52/138 (37.68%), Postives = 83/138 (60.14%), Query Frame = 3
Query:   54 KEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +++E +VR ++ +    ++E ++   ++  L+      G V+  LD++R IV+  +GPR+VV     +DK KL  GTRV LD  T+ I+  LP   DP V      +  NV+Y+ +GGL  Q++ELRE+IELPL +PE
Sbjct:   24 RQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPE 161          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.827e-21
Identity = 50/138 (36.23%), Postives = 83/138 (60.14%), Query Frame = 3
Query:   54 KEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +++E +VR ++ +    ++E ++   ++  L+      G V+  LD +R IV+  +GPR+VV     +D++KL  GTRV LD  T+ ++  LP   DP V      +  NV+Y+ +GGL  Q++ELRE+IELPL +PE
Sbjct:   27 RQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPE 164          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.692e-21
Identity = 50/147 (34.01%), Postives = 87/147 (59.18%), Query Frame = 3
Query:   27 EYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +Y K    ++ +E   + ++      ++E  +   +++ L+S   ++G V   L++ R++VK+S+GP++VV     +++E+L  G RV L+  TL I+  LP   DP+VY    E+   VSY  +GGL  QI E+RE++ELPL+ PE
Sbjct:   19 DYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPE 165          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.074e-20
Identity = 52/136 (38.24%), Postives = 84/136 (61.76%), Query Frame = 3
Query:   60 IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +E +++S++  +   +KE N  + +++ + S   I   VL  L + R++V++SSGP  VV   S +D++ +  G  V L+    TI+  LP++ DP+V  M   +  NV+YS +GGL +QIRELRE +ELPL NPE
Sbjct:   23 LEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNPE 158          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.403e-20
Identity = 50/138 (36.23%), Postives = 84/138 (60.87%), Query Frame = 3
Query:   54 KEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +++E +VR+++ +    ++E ++   ++  L+      G V+  LD+ER IV+  +GPR+VV     ++++KL  G RV LD  T+ I+  LP E DP V      +   V+Y+ +GGL  Q++ELRE+IELPL +PE
Sbjct:   25 RQLELQVRTLEADKERLERELSRLRMEMSRLRQPPAFAGNVIEVLDDERAIVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYNDIGGLEKQLQELREAIELPLKHPE 162          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.403e-20
Identity = 49/138 (35.51%), Postives = 83/138 (60.14%), Query Frame = 3
Query:   54 KEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +++E +VR ++ +    ++E ++   ++  L+      G V+  LD++R IV+  +GPR+VV     ++++KL  G RV LD  T+ I+  LP   DP V      +  NV+Y+ +GGL  Q++ELRE+IELPL +PE
Sbjct:   27 RQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPE 164          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.082e-20
Identity = 53/157 (33.76%), Postives = 91/157 (57.96%), Query Frame = 3
Query:    3 VRRRNAMTEYRKKLLQHK--EIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            V+ R    E R   L+ +  +IES  R ++      ++E  K + +L  +++   IIG V+  + N+R+IV++S+GP+++V     +D++KL  G +V L+  TL I   +P   +P V  M   +   V Y  +GGL +QI+EL+E++ELPL +PE
Sbjct:   27 VQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPE 183          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 4.082e-20
Identity = 53/157 (33.76%), Postives = 91/157 (57.96%), Query Frame = 3
Query:    3 VRRRNAMTEYRKKLLQHK--EIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            V+ R    E R   L+ +  +IES  R ++      ++E  K + +L  +++   IIG V+  + N+R+IV++S+GP+++V     +D++KL  G +V L+  TL I   +P   +P V  M   +   V Y  +GGL +QI+EL+E++ELPL+ PE
Sbjct:   27 VQDRVRQLESRNSFLEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPE 183          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.331e-20
Identity = 48/138 (34.78%), Postives = 83/138 (60.14%), Query Frame = 3
Query:   54 KEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +++E +VR+++ +    ++E ++   ++  L+      G V+  LD++R IV+  +GPR+VV     ++++KL  G+RV LD  T+ I+  LP E DP V      +   V+Y  +GGL  Q+ ELRE++ELPL +PE
Sbjct:   25 RQLELQVRTLEADKERLERELSRLRTEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEKPRVTYQDIGGLERQLAELREAVELPLKHPE 162          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.331e-20
Identity = 50/136 (36.76%), Postives = 83/136 (61.03%), Query Frame = 3
Query:   60 IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +E +++S++  +   +KE N  + +++ + S   I   VL  L + R++V++SSGP  VV   S +D++ +  G  V L+    TI+  LP++ DP+V  M   +  NV+YS +GGL +QI+ELRE +ELPL  PE
Sbjct:   23 LEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPE 158          
The following BLAST results are available for this feature:
BLAST of CX293823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
PSMR_PYRFU5.696e-2237.68Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_PYRHO2.827e-2136.23Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_ARCFU3.692e-2134.01Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PSMR_SULSO1.074e-2038.24Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PSMR_PYRKO1.403e-2036.23Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PSMR_PYRAB1.403e-2035.51Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_METMA4.082e-2033.76Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METAC4.082e-2033.76Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_THEGJ5.331e-2034.78Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_SULIY5.331e-2036.76Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05001B03SK FlavSen1 Citrus clementina cDNA clone C05001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293823 ID=CX293823; Name=CX293823; organism=Citrus clementina; type=EST; length=469bp
CCGTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACTCCAG
CACAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGAGAGC
TGCAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTCAAA
GTGTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGAACGC
TTGATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCCGCAG
CAAAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTTGATA
TGACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCCGGTT
GTATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGGCTGT
GGGTGGTTTATCTGATCAGATCAGAGAATTAAGGGAATCTATTGAGCTAC
CTTTGATGAATCCTGAGCT
back to top