CX293823

Overview
NameCX293823
Unique NameCX293823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.896e-17
Identity = 48/141 (34.04%), Postives = 85/141 (60.28%), Query Frame = 3
Query:   36 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPL 455
            K+L +H E I+ +   +K+  R+ K+E  + ++++K +QSV  +IG+ +  +D    IV++S+G  YVV   S +D+EKL   + V L   +  ++  LP E D  +  +   +  +V+Y+ VGGL  Q +E+RE++ELPL
Sbjct:   46 KRLQRHLEYIQLQEEYIKDEQRSLKRELVRAQEEIKRIQSVPLVIGQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPL 186          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.224e-17
Identity = 44/140 (31.43%), Postives = 80/140 (57.14%), Query Frame = 3
Query:   48 QHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            Q +++ES  R ++      ++E  K + +++ L++   I+G +   +D+ R++V++S+GPR++V     V+   L +G R  L+  +L I+  LP   D  VY M   D    +Y  +GGL  QI E+RE++ELP+  P+
Sbjct:   38 QIRQLESDKRYIETQKIRYEREVRKLKSEIEHLKTPPLIVGTITDIIDSGRVVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEIREAVELPMTRPD 177          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.517e-17
Identity = 47/145 (32.41%), Postives = 82/145 (56.55%), Query Frame = 3
Query:   54 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +E++  V    +NLR  + + N+         ++L+ LQ  G  +GEV+R +D ++++VK     ++VV     +D   +T   RV L   + T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PE
Sbjct:   29 EELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPE 173          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.517e-17
Identity = 47/145 (32.41%), Postives = 82/145 (56.55%), Query Frame = 3
Query:   54 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +E++  V    +NLR  + + N+         ++L+ LQ  G  +GEV+R +D ++++VK     ++VV     +D   +T   RV L   + T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PE
Sbjct:   29 EELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPE 173          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.517e-17
Identity = 47/145 (32.41%), Postives = 82/145 (56.55%), Query Frame = 3
Query:   54 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +E++  V    +NLR  + + N+         ++L+ LQ  G  +GEV+R +D ++++VK     ++VV     +D   +T   RV L   + T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PE
Sbjct:   29 EELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPE 173          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.517e-17
Identity = 47/145 (32.41%), Postives = 82/145 (56.55%), Query Frame = 3
Query:   54 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +E++  V    +NLR  + + N+         ++L+ LQ  G  +GEV+R +D ++++VK     ++VV     +D   +T   RV L   + T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PE
Sbjct:   29 EELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPE 173          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 5.517e-17
Identity = 47/145 (32.41%), Postives = 82/145 (56.55%), Query Frame = 3
Query:   54 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +E++  V    +NLR  + + N+         ++L+ LQ  G  +GEV+R +D ++++VK     ++VV     +D   +T   RV L   + T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PE
Sbjct:   29 EELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPE 173          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.229e-16
Identity = 46/145 (31.72%), Postives = 82/145 (56.55%), Query Frame = 3
Query:   54 KEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            ++++  V    +NLR  + + N+         ++L+ LQ  G  +GEV+R +D ++++VK     ++VV     +D   +T   RV L   + T+ + LP +VDP+V  M+ E   + +Y  +GGL  QI+E++E IELP+ +PE
Sbjct:   24 EDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPE 168          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.229e-16
Identity = 52/152 (34.21%), Postives = 80/152 (52.63%), Query Frame = 3
Query:   36 KKLLQHKEIESRVRSVKE----NLRAAKKEFNKT----EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            K  LQH +   R++  K      L A + E N       ++L+ LQ  G  +GEV++ +   +++VK     +YVV     +D  KLT  TRV L   +  +   LP +VDP+V  M  E   + +Y  +GGL  QI+E++E IELP+ +PE
Sbjct:   34 KYYLQHLDELQRLQREKSYNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPE 185          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.605e-16
Identity = 51/149 (34.23%), Postives = 81/149 (54.36%), Query Frame = 3
Query:   45 LQH-KEIESRVRSVKENLR---AAKKEFNKT----EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            LQH  E++ ++R    NL    A + E N       ++L+ LQ  G  +GEV++ +   +++VK     +YVV     +D  K+T  TRV L   +  +   LP +VDP+V  M  E   + +Y  +GGL  QI+E++E IELP+ +PE
Sbjct:   37 LQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPE 185          
The following BLAST results are available for this feature:
BLAST of CX293823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
PRS6B_ASPNG1.896e-1734.0426S protease regulatory subunit 6B homolog OS=Aspe... [more]
PSMR_METHJ4.224e-1731.43Proteasome-activating nucleotidase OS=Methanospiri... [more]
PRS8_RAT5.517e-1732.4126S protease regulatory subunit 8 OS=Rattus norveg... [more]
PRS8_PIG5.517e-1732.4126S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE5.517e-1732.4126S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_HUMAN5.517e-1732.4126S protease regulatory subunit 8 OS=Homo sapiens ... [more]
PRS8_BOVIN5.517e-1732.4126S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PRS8_XENLA1.229e-1631.7226S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PRS8B_ARATH1.229e-1634.2126S protease regulatory subunit 8 homolog B OS=Ara... [more]
PRS8A_ARATH1.605e-1634.2326S protease regulatory subunit 8 homolog A OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC05001B03SK FlavSen1 Citrus clementina cDNA clone C05001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293823 ID=CX293823; Name=CX293823; organism=Citrus clementina; type=EST; length=469bp
CCGTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACTCCAG
CACAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGAGAGC
TGCAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTCAAA
GTGTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGAACGC
TTGATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCCGCAG
CAAAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTTGATA
TGACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCCGGTT
GTATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGGCTGT
GGGTGGTTTATCTGATCAGATCAGAGAATTAAGGGAATCTATTGAGCTAC
CTTTGATGAATCCTGAGCT
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