CX293823

Overview
NameCX293823
Unique NameCX293823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14246 contig Ccv1_Contig14246:72..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.359e-15
Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   36 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            KKL Q  E +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + E
Sbjct:   45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFE 189          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.359e-15
Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   36 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            KKL Q  E +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + E
Sbjct:   45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFE 189          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.359e-15
Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   36 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            KKL Q  E +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + E
Sbjct:   45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFE 189          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.359e-15
Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   36 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            KKL Q  E +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP E D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + E
Sbjct:   45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPNASVALHKHSNALVDVLPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFE 189          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.775e-15
Identity = 43/129 (33.33%), Postives = 75/129 (58.14%), Query Frame = 3
Query:   81 VKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +K+  R  K+E  + ++++K +QSV  +IG+ L P+D    IV +++G  YVV   S +D+E L     V L   +  ++  LP + D  +  M   +  +V+Y+ VGGL  Q +E+RE++ELPL+  +
Sbjct:   68 IKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQAD 196          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 3.027e-15
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 3
Query:   36 KKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +++  H  +E    S  E L+  +K+  + +  L+ ++     IG +   +D++  IV + + P Y V   S VDKE L  G  V+L   T++I+  L  + DP+V  M  +     SYS +GGL  QI+E++ES+ELPL +PE
Sbjct:   63 ERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPE 206          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.163e-15
Identity = 53/163 (32.52%), Postives = 86/163 (52.76%), Query Frame = 3
Query:   15 NAMTEYRKKLLQHK----EIESRVRSV--------KENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            N   +  K+ LQ K    E+ESR+  +        +ENL+  K E      +L  ++    I+G V+  +   +++VK+S+GP ++V     V+ + L  G RV L+  TLT++  LP   D     M  ++  NV Y  +GGL  Q++E+RE +ELPL +PE
Sbjct:   33 NLKNDLLKEELQEKARIAELESRILKLELEKKELERENLQLMK-ENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPE 194          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.744e-15
Identity = 45/145 (31.03%), Postives = 79/145 (54.48%), Query Frame = 3
Query:   36 KKLLQHKE-IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            KKL Q  E +E +   +K+  +  KKEF   ++++K +QS+  +IG+ L  +D    IV +++G  Y V   S +D+E L     V L   +  ++  LP   D  +  +  +   +V Y+ +GG+  Q +E+RE++ELPL + E
Sbjct:   45 KKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFE 189          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.807e-15
Identity = 46/158 (29.11%), Postives = 85/158 (53.80%), Query Frame = 3
Query:   15 NAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTE-------DDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            N +  Y +K+   ++ E  +    +NLR  + + N          ++++ LQ  G  +GEV++ +   +++VK     +YVV     +D +++    RV L   +  +++ LP +VDP+V  M+ E   + +Y  VGGL  QI+E++E IELP+ +PE
Sbjct:   15 NIVQYYTQKI---QDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPE 169          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.962e-14
Identity = 41/136 (30.15%), Postives = 77/136 (56.62%), Query Frame = 3
Query:   60 IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            IE +   VK+ L+  ++E  + ++++K +QSV  +IG+ +  +D    IV +++G  Y V   S +++E L     V LD  +  ++  LP E D  +  +   +  +V+Y+ +GG   Q +E+RE++ELPL + E
Sbjct:   49 IEIQEEYVKDELKNLRREHLRAQEEVKRIQSVPLVIGQFMEMIDQNNAIVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHE 184          
The following BLAST results are available for this feature:
BLAST of CX293823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
PRS6B_RAT1.359e-1531.7226S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MACFA1.359e-1531.7226S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN1.359e-1531.7226S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN1.359e-1531.7226S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS6B_YEAST1.775e-1533.3326S protease regulatory subunit 6B homolog OS=Sacc... [more]
PRS4_YEAST3.027e-1533.3326S protease regulatory subunit 4 homolog OS=Sacch... [more]
PSMR_METJA5.163e-1532.52Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PRS6B_MOUSE6.744e-1531.0326S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS8_SCHPO8.807e-1529.1126S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS6B_SOLTU1.962e-1430.1526S protease regulatory subunit 6B homolog OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionC05001B03SK FlavSen1 Citrus clementina cDNA clone C05001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293823 ID=CX293823; Name=CX293823; organism=Citrus clementina; type=EST; length=469bp
CCGTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACTCCAG
CACAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGAGAGC
TGCAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTCAAA
GTGTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGAACGC
TTGATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCCGCAG
CAAAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTTGATA
TGACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCCGGTT
GTATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGGCTGT
GGGTGGTTTATCTGATCAGATCAGAGAATTAAGGGAATCTATTGAGCTAC
CTTTGATGAATCCTGAGCT
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