CX294080

Overview
NameCX294080
Unique NameCX294080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10799 contig Ccv1_Contig10799:14..632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_ANOGA (Eukaryotic translation initiation factor 3 subunit F OS=Anopheles gambiae GN=eIF3-S5 PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 1.664e-30
Identity = 67/148 (45.27%), Postives = 93/148 (62.84%), Query Frame = 3
Query:  102 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            N+T +VHP+V+F I D Y RR   +ERVIGTLLGSV   G V++ N + +PH E +DQV  ++ Y   + + + +VN  E IVGW++TG  VT  S++IHE+Y RE  NPVHLT+DT        +KAYV V+L +   +    F  I
Sbjct:    9 NLTVRVHPVVLFQIVDAYERRNADSERVIGTLLGSV-DKGVVEVTNCFCLPHKEHTDQVEAELGYASDLYELNQRVNASENIVGWWATGQEVTNHSSVIHEYYARECTNPVHLTLDTSLTGARMGIKAYVCVSLGVPGGKSGCMFTPI 155          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EI3F1_DROYA (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila yakuba GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.173e-30
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  102 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            N+T +VHP+V+F + D + RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   ++AYV + L +   +    F  I
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKSGCMFTPI 151          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EI3F1_DROVI (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila virilis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.173e-30
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  102 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            N+T +VHP+V+F + D + RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   ++AYV + L +   +    F  I
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNANESVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKTGCMFTPI 151          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EI3F1_DROSI (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila simulans GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.173e-30
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  102 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            N+T +VHP+V+F + D + RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   ++AYV + L +   +    F  I
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKSGCMFTPI 151          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EI3F1_DROSE (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila sechellia GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.173e-30
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  102 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            N+T +VHP+V+F + D + RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   ++AYV + L +   +    F  I
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKSGCMFTPI 151          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EI3F1_DROME (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila melanogaster GN=eIF3-S5-1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.173e-30
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  102 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            N+T +VHP+V+F + D + RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   ++AYV + L +   +    F  I
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKSGCMFTPI 151          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EI3F1_DROGR (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila grimshawi GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.173e-30
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  102 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            N+T +VHP+V+F + D + RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   ++AYV + L +   +    F  I
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNESVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKTGCMFTPI 151          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EI3F1_DROER (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila erecta GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.173e-30
Identity = 66/148 (44.59%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  102 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            N+T +VHP+V+F + D + RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   ++AYV + L +   +    F  I
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKSGCMFTPI 151          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EI3F1_DROMO (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila mojavensis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.838e-30
Identity = 65/148 (43.92%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  102 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            N+T +VHP+V+F + D + RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  ++G   ++AY+ + L +   +    F  I
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNANENVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQSGRMGLRAYICIQLGVPGGKTGCMFTPI 151          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EI3F1_DROWI (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila willistoni GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.707e-30
Identity = 65/148 (43.92%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  102 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            N+T +VHP+V+F + D + RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M + + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVH+TVDT  + G   ++AYV + L +   +    F  I
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYELNRKVNSNESVVGWWATGNEVTNHSSVIHEYYARECNNPVHVTVDTSLQGGRMGLRAYVCIQLGVPGGKSGCMFTPI 151          
The following BLAST results are available for this feature:
BLAST of CX294080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EIF3F_ANOGA1.664e-3045.27Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROYA2.173e-3044.59Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROVI2.173e-3044.59Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROSI2.173e-3044.59Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROSE2.173e-3044.59Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROME2.173e-3044.59Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROGR2.173e-3044.59Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROER2.173e-3044.59Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROMO2.838e-3043.92Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROWI3.707e-3043.92Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC05005G04SK FlavRip1 Citrus clementina cDNA clone C05005G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294080 ID=CX294080; Name=CX294080; organism=Citrus clementina; type=EST; length=619bp
CCTCTTTGCTTTTTGAGTCGAGATCAGAAGAGAAGAAGATAAGAATGGCG
GCAAGCGACCGCACGGTGCTGCAATTCGGACCTTCATCAGCGGTGACGTC
GAATATAACGGCGAAAGTTCACCCGCTGGTTATTTTCAACATCTCCGACT
GTTACGTCAGACGCCCCGACCAAGCTGAACGCGTCATCGGCACGCTTCTT
GGCTCCGTTTTGCCTGATGGCACCGTCGATATCCGTAACTCCTACGTCGT
TCCTCACAACGAGTTCTCCGATCAGGTTGCATTGGATATTGAATACCATC
ATACCATGTTAAAGTCACACCTAAAGGTGAATCCTCAGGAAGTGATTGTT
GGATGGTTTTCTACAGGGTTGGGAGTCACTGGTGGCAGTGCCTTGATCCA
TGAATTCTATTGTCGCGAAGTTCCTAATCCTGTCCACCTGACTGTAGATA
CAGGATTCAGAAATGGAGAGGGTACTGTAAAAGCTTATGTTTCTGTCAAT
TTGTCTCTTGGAGATCGACAGCTTGCTGCACAATTTCAGAAAATCCTCTT
GATCTTCGATGATTGAAGCTGAGCGAGTTGGATTCATATCTGAGTCACAT
CGGTGACAACTCCTAGTGA
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