CX294080

Overview
NameCX294080
Unique NameCX294080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10799 contig Ccv1_Contig10799:14..632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPFC (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_008750 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.337e-22
Identity = 60/129 (46.51%), Postives = 81/129 (62.79%), Query Frame = 3
Query:   84 SSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDT 452
            S+  T+ +   + P  IF+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T
Sbjct:   21 SAPTTAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVST 149          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_ASPNC (Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=An08g00880 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.844e-21
Identity = 62/143 (43.36%), Postives = 87/143 (60.84%), Query Frame = 3
Query:   84 SSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDTGFRNGEGTVKAYVS 494
            ++  T+ +   + P  +F+I D  +RR    ERVIGTLLG+   DGT V+IR+++ V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T       T +AY+S
Sbjct:   21 TAPTTAPLNVVIQPQALFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYSGQGDGTWPHPAVHLTVSTEAGKDIET-RAYIS 162          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_USTMA (Eukaryotic translation initiation factor 3 subunit F OS=Ustilago maydis GN=UM00175 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 59/133 (44.36%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  117 VHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP--NPVHLTVDT---GFRNGEGTVKAYVS 494
            VHP+ +F+I D Y+RR D   RVIGTLLG+   +  ++I+N + VPH E ++  QV +D+EYH +M +   KV P EVIVGW++T   +   SALI +FY RE      VHLT+DT   G +     +K+Y+S
Sbjct:   34 VHPVALFSILDHYLRRNDGQHRVIGTLLGT-RTESEIEIKNCFAVPHLEDAEEGQVQVDMEYHRSMYELCQKVRPDEVIVGWYATSPELNTYSALIQDFYSRETAPHQAVHLTMDTTIDGSKPSGLGIKSYIS 165          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_COCIM (Eukaryotic translation initiation factor 3 subunit F OS=Coccidioides immitis GN=CIMG_07134 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.007e-21
Identity = 59/125 (47.20%), Postives = 77/125 (61.60%), Query Frame = 3
Query:   96 TSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCRE----VPNP-VHLTVDT 452
            T+ +   + P  IF+I D  +RR    ERVIGTLLG+   DGT V+IR  + V H E +DQV +D+EY   ML  HLK NP+EV+VGW++T   +   SALI  FY  +     P+P VHLTV T
Sbjct:   25 TAPLNVVIQPQAIFSILDHSLRRNADQERVIGTLLGTRSEDGTEVEIRTCFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTFSALIQNFYGGQGDGTWPHPAVHLTVST 149          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_NEUCR (Eukaryotic translation initiation factor 3 subunit F OS=Neurospora crassa GN=1A9.200 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.321e-19
Identity = 61/163 (37.42%), Postives = 91/163 (55.83%), Query Frame = 3
Query:   66 VLQFGPSSAVTSNITAKVHPLVIFNISDCYVRRPD---QAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCR----EVPNP-VHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLA 527
            VL FG S+A    +T  + P  +F+I D  VRR D   Q+ RVIG L+G    DG+ V++R+++ +PH E  DQV +D+EY   ML   LK NP+E ++GW++T   +   SALI  F+        P+P VHLT+ T         K Y+S  +++   + A
Sbjct:   19 VLGFGVSNAP---LTVNIQPQAVFSIIDHAVRRDDRDTQSTRVIGALVGVRSEDGSEVEVRSTFAIPHTENEDQVEVDVEYQKNMLALTLKANPRETLLGWYTTSHELNSFSALIQNFFASPETGTFPHPAVHLTIGTE-AGATIDTKTYISAPVAVSPERAA 177          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EI3F2_DROWI (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila willistoni GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.254e-19
Identity = 49/132 (37.12%), Postives = 80/132 (60.61%), Query Frame = 3
Query:  117 VHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPD-GTVDIRNSYVVPHNEF--SDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVP--NPVHLTVDTGFRNGEGTVKAYVSV 497
            + PLV+ +I D Y RRP    +VIGTLLG   P+ G ++I N + + H ++  SD++ +D++Y + M + +    PQE I+GW++TG  V+  +  +HE+Y RE    NP+HL +DT  R     ++ Y +V
Sbjct:   13 LQPLVLLHIIDAYERRPKDCTQVIGTLLGRNNPESGHLEISNCFTLLHKDYPNSDRIDVDLQYANDMYELNQLTYPQEKIIGWYATGKEVSRSAVNLHEYYARECADGNPMHLLIDTSLRGQRMMMRLYTAV 144          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EI3F2_DROSE (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila sechellia GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 54/142 (38.03%), Postives = 83/142 (58.45%), Query Frame = 3
Query:  102 NITAKVH--PLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV--PNPVHLTVDTGFRNGEGTVKAYVSVNLSL 509
            +I AKV   PLV+F I D Y RRP    +V+GTLLG    D  ++I N + VPH E S+  ++ LD+ Y   +L+ ++   P E ++GWF TG  V+  ++LIH++Y RE     P+HL VD   +N   + + Y +V + +
Sbjct:    6 SIRAKVFLKPLVLFQIIDAYDRRPKGDNQVMGTLLGRTKEDH-IEITNCFTVPHKEHSENKRIDLDMAYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRECGERQPLHLLVDASLKNQRLSTRLYCAVEMGV 146          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EI3F2_DROME (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila melanogaster GN=eIF3-S5-2 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.845e-19
Identity = 53/142 (37.32%), Postives = 84/142 (59.15%), Query Frame = 3
Query:  102 NITAKVH--PLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV--PNPVHLTVDTGFRNGEGTVKAYVSVNLSL 509
            ++ AKV+  PLV F I D Y RRP    +V+GTLLG    +G ++I N + VPH E S+  ++ LD+ Y   +L+ ++   P E ++GWF TG  V+  ++LIH++Y RE     P+HL VD   +N   + + Y +V + +
Sbjct:    6 SMRAKVYLKPLVFFQIIDAYDRRPKGDNQVMGTLLGRN-KEGHIEITNCFTVPHKEHSENKRIDLDMAYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRECCEGQPLHLLVDAALKNQRLSTRLYCAVEMGV 146          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_YARLI (Eukaryotic translation initiation factor 3 subunit F OS=Yarrowia lipolytica GN=YALI0E26851g PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.565e-19
Identity = 47/108 (43.52%), Postives = 72/108 (66.67%), Query Frame = 3
Query:  132 IFNISDCYVRRPDQAERVIGTLLGSVLPDGT-VDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNP-VHLTVD 449
            +F I D  +RR ++  +VIGTL+G    DG+ V++RN+Y VPH+E   ++ +D+EY+ TML  H K  P+EVIVGW++T   +   S LIH++Y +    P +HLTV+
Sbjct:   27 LFQILDHALRREEEQSKVIGTLVGIRSEDGSEVEVRNAYAVPHSESEQEMTIDLEYNPTMLALHRKAFPKEVIVGWYATSSELNTFSGLIHDYYTQLDGTPAIHLTVE 134          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EI3F2_DROSI (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila simulans GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 50/133 (37.59%), Postives = 78/133 (58.65%), Query Frame = 3
Query:  123 PLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSD--QVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREV--PNPVHLTVDTGFRNGEGTVKAYVSVNLSL 509
            PLV+F I D Y RRP    +V+GTLLG    D  ++I N + VPH E S+  ++ LD+ Y   +L+ ++   P E ++GWF TG  V+  ++LIH++Y RE     P+HL VD   +N   + + Y +V + +
Sbjct:   15 PLVLFQIIDAYDRRPKGDNQVMGTLLGRNKEDH-IEITNCFTVPHKEHSENKRIDLDMTYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRECGERQPLHLLVDASLKNQRLSTRLYCAVEMGV 146          
The following BLAST results are available for this feature:
BLAST of CX294080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EIF3F_ASPFC6.337e-2246.51Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_ASPNC1.844e-2143.36Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_USTMA2.408e-2144.36Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_COCIM7.007e-2147.20Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_NEUCR1.321e-1937.42Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROWI2.254e-1937.12Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROSE2.944e-1938.03Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROME3.845e-1937.32Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_YARLI8.565e-1943.52Eukaryotic translation initiation factor 3 subunit... [more]
EI3F2_DROSI1.461e-1837.59Eukaryotic translation initiation factor 3 subunit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05005G04SK FlavRip1 Citrus clementina cDNA clone C05005G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294080 ID=CX294080; Name=CX294080; organism=Citrus clementina; type=EST; length=619bp
CCTCTTTGCTTTTTGAGTCGAGATCAGAAGAGAAGAAGATAAGAATGGCG
GCAAGCGACCGCACGGTGCTGCAATTCGGACCTTCATCAGCGGTGACGTC
GAATATAACGGCGAAAGTTCACCCGCTGGTTATTTTCAACATCTCCGACT
GTTACGTCAGACGCCCCGACCAAGCTGAACGCGTCATCGGCACGCTTCTT
GGCTCCGTTTTGCCTGATGGCACCGTCGATATCCGTAACTCCTACGTCGT
TCCTCACAACGAGTTCTCCGATCAGGTTGCATTGGATATTGAATACCATC
ATACCATGTTAAAGTCACACCTAAAGGTGAATCCTCAGGAAGTGATTGTT
GGATGGTTTTCTACAGGGTTGGGAGTCACTGGTGGCAGTGCCTTGATCCA
TGAATTCTATTGTCGCGAAGTTCCTAATCCTGTCCACCTGACTGTAGATA
CAGGATTCAGAAATGGAGAGGGTACTGTAAAAGCTTATGTTTCTGTCAAT
TTGTCTCTTGGAGATCGACAGCTTGCTGCACAATTTCAGAAAATCCTCTT
GATCTTCGATGATTGAAGCTGAGCGAGTTGGATTCATATCTGAGTCACAT
CGGTGACAACTCCTAGTGA
back to top