CX294199 | Citrus Genome Database

Overview


Name	CX294199
Unique Name	CX294199
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	371

Libraries


Library Name	Type
AbsAOv1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_NICTO (30S ribosomal protein S3, chloroplastic OS=Nicotiana tomentosiformis GN=rps3 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.780e-17
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 2

Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQ 238
            R SSGVEGIARIEI+KRIDLIQVII++GFPKLL+E+RPR IEELQ
Sbjct:   52 RTSSGVEGIARIEIKKRIDLIQVIIFMGFPKLLIESRPRGIEELQ 96

HSP 2 Score: 30.8018 bits (68), Expect = 5.780e-17
Identity = 14/22 (63.64%), Postives = 17/22 (77.27%), Query Frame = 1

Query:    4 GHYGR--AKPKNYCEGLQEDQK 63
            GH+    ++PKNY EGLQEDQK
Sbjct:   17 GHHSLWFSQPKNYSEGLQEDQK 38

[Close]

BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_POPAL (30S ribosomal protein S3, chloroplastic OS=Populus alba GN=rps3 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.270e-16
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 2

Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            +ISSGVEGI  IEIQKRID+IQVIIY+GFPK L E +P+RI+ELQ+NV
Sbjct:   52 KISSGVEGIGHIEIQKRIDVIQVIIYLGFPKFLTEGKPKRIKELQINV 99

HSP 2 Score: 30.0314 bits (66), Expect = 1.270e-16
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1

Query:   19 AKPKNYCEGLQEDQK 63
            A+PKN+ EGLQEDQK
Sbjct:   24 AQPKNFSEGLQEDQK 38

[Close]

BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_COFAR (30S ribosomal protein S3, chloroplastic OS=Coffea arabica GN=rps3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.651e-16
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 2

Query:  101 SRISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            ++ISSGVEGIARIEIQKRIDLIQVII++GFPK LLEN+PR IEELQ N+
Sbjct:   51 TKISSGVEGIARIEIQKRIDLIQVIIFMGFPKPLLENQPRGIEELQTNL 99

HSP 2 Score: 25.7942 bits (55), Expect = 1.651e-16
Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 1

Query:    4 GHYGR--AKPKNYCEGLQEDQK 63
            GH+     + KNY EGLQEDQ+
Sbjct:   17 GHHSLWFTQAKNYSEGLQEDQQ 38

[Close]

BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_POPTR (30S ribosomal protein S3, chloroplastic OS=Populus trichocarpa GN=rps3 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.651e-16
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 2

Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            +ISSGVEGI  IEIQKRID+IQVIIY+GFPK L E +P+RI+ELQ+NV
Sbjct:   52 KISSGVEGIGHIEIQKRIDVIQVIIYLGFPKFLTEGKPKRIKELQINV 99

HSP 2 Score: 29.6462 bits (65), Expect = 1.651e-16
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1

Query:   19 AKPKNYCEGLQEDQK 63
            A+PKN+ EGLQEDQK
Sbjct:   24 AQPKNFFEGLQEDQK 38

[Close]

BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_LOTJA (30S ribosomal protein S3, chloroplastic OS=Lotus japonicus GN=rps3 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.146e-16
Identity = 39/48 (81.25%), Postives = 46/48 (95.83%), Query Frame = 2

Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            +ISSGVEGI RI+IQKRIDLIQVIIY+GFPKLL++ +PRRIEELQ+NV
Sbjct:   52 KISSGVEGIGRIKIQKRIDLIQVIIYMGFPKLLIDGKPRRIEELQINV 99

HSP 2 Score: 23.8682 bits (50), Expect = 2.146e-16
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 1

Query:   19 AKPKNYCEGLQEDQK 63
            A+P NY E L+ED+K
Sbjct:   24 AQPTNYSENLKEDKK 38

[Close]

BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_CERDE (30S ribosomal protein S3, chloroplastic OS=Ceratophyllum demersum GN=rps3 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.146e-16
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 2

Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            RISSG EGIARI IQKRIDLIQVIIYIGFP LL+E R R IEELQ NV
Sbjct:   52 RISSGFEGIARIGIQKRIDLIQVIIYIGFPNLLIEGRTRGIEELQSNV 99

HSP 2 Score: 29.261 bits (64), Expect = 2.146e-16
Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1

Query:   19 AKPKNYCEGLQEDQK 63
            A+PKNY +GLQED+K
Sbjct:   24 AQPKNYSDGLQEDEK 38

[Close]

BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_PLAOC (30S ribosomal protein S3, chloroplastic OS=Platanus occidentalis GN=rps3 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.146e-16
Identity = 37/43 (86.05%), Postives = 42/43 (97.67%), Query Frame = 2

Query:  119 VEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            VEGIARIEIQKRIDLIQVIIY+GFPKLL+E+RPR IEELQ+N+
Sbjct:   56 VEGIARIEIQKRIDLIQVIIYMGFPKLLIEDRPRGIEELQINL 98

HSP 2 Score: 29.6462 bits (65), Expect = 2.146e-16
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = 1

Query:   19 AKPKNYCEGLQEDQK 63
            A+PK+Y EGLQEDQK
Sbjct:   24 AQPKSYSEGLQEDQK 38

[Close]

BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_CUCSA (30S ribosomal protein S3, chloroplastic OS=Cucumis sativus GN=rps3 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.713e-16
Identity = 37/48 (77.08%), Postives = 45/48 (93.75%), Query Frame = 2

Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            RI SGVEGIARIEIQKRIDLIQVII++GFPKL++++  R+IEELQ+NV
Sbjct:   52 RIFSGVEGIARIEIQKRIDLIQVIIFMGFPKLVIDDGSRKIEELQINV 99

HSP 2 Score: 28.8758 bits (63), Expect = 4.713e-16
Identity = 14/22 (63.64%), Postives = 15/22 (68.18%), Query Frame = 1

Query:    4 GHYGR--AKPKNYCEGLQEDQK 63
            GH+    A PK Y EGLQEDQK
Sbjct:   17 GHHSLWFAHPKKYSEGLQEDQK 38

[Close]

BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_LIRTU (30S ribosomal protein S3, chloroplastic OS=Liriodendron tulipifera GN=rps3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.482e-15
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 2

Query:  104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            RISSG EGIA IEI+K+IDLIQVIIYIGFP LL+E R R IEELQ+NV
Sbjct:   53 RISSGFEGIAHIEIKKKIDLIQVIIYIGFPNLLIEGRTRGIEELQINV 100

HSP 2 Score: 25.409 bits (54), Expect = 6.482e-15
Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1

Query:   19 AKPKNYCEGLQEDQK 63
            A+PK+Y  GLQED+K
Sbjct:   25 AQPKSYSIGLQEDEK 39

[Close]

BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_IPOPU (30S ribosomal protein S3, chloroplastic OS=Ipomoea purpurea GN=rps3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.423e-15
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 2

Query:  110 SSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247
            SSGV GIARI+IQK IDLI+VII++GFPKLL+ENRPR  EELQM +
Sbjct:   54 SSGVTGIARIDIQKGIDLIKVIIFMGFPKLLIENRPRATEELQMTL 99

HSP 2 Score: 28.4906 bits (62), Expect = 8.423e-15
Identity = 13/22 (59.09%), Postives = 16/22 (72.73%), Query Frame = 1

Query:    4 GHYGR--AKPKNYCEGLQEDQK 63
            GH+    ++PKNY E LQEDQK
Sbjct:   17 GHHSLWFSQPKNYSESLQEDQK 38

The following BLAST results are available for this feature:

BLAST of CX294199 vs. ExPASy Swiss-Prot

BLAST of CX294199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58


Match Name	E-value	Identity	Description
RR3_NICTO	5.780e-17	84.44	30S ribosomal protein S3, chloroplastic OS=Nicotia...	[more]
RR3_POPAL	1.270e-16	75.00	30S ribosomal protein S3, chloroplastic OS=Populus...	[more]
RR3_COFAR	1.651e-16	81.63	30S ribosomal protein S3, chloroplastic OS=Coffea ...	[more]
RR3_POPTR	1.651e-16	75.00	30S ribosomal protein S3, chloroplastic OS=Populus...	[more]
RR3_LOTJA	2.146e-16	81.25	30S ribosomal protein S3, chloroplastic OS=Lotus j...	[more]
RR3_CERDE	2.146e-16	83.33	30S ribosomal protein S3, chloroplastic OS=Ceratop...	[more]
RR3_PLAOC	2.146e-16	86.05	30S ribosomal protein S3, chloroplastic OS=Platanu...	[more]
RR3_CUCSA	4.713e-16	77.08	30S ribosomal protein S3, chloroplastic OS=Cucumis...	[more]
RR3_LIRTU	6.482e-15	79.17	30S ribosomal protein S3, chloroplastic OS=Liriode...	[more]
RR3_IPOPU	8.423e-15	76.09	30S ribosomal protein S3, chloroplastic OS=Ipomoea...	[more]

Pages

Properties


Property Name	Value
Genbank description	C05013D06SK AbsAOv1 Citrus clementina cDNA clone C05013D06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX294199 ID=CX294199; Name=CX294199; organism=Citrus clementina; type=EST; length=371bp
TTCGGCCACTACGGCCGGGCAAAACCAAAAAACTACTGCGAGGGTCTACA
AGAAGATCAAAAAAATACGAAACTTTATTAAGAATTATATAAAAAAAAAT
AGCAGAATATCTTCCGGTGTTGAGGGAATTGCACGGATAGAGATTCAAAA
AAGAATTGATCTAATTCAAGTTATAATCTATATAGGGTTCCCAAAATTAT
TACTAGAAAATAGACCGCGAAGAATTGAAGAATTACAGATGAATGTTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTTGGCCCCCCCCGCCCCTT
TTTTTTTTTAATTCCAAAAATTTTTTTGGGGGGGCCCCATTTTGGGCCCT
TTTGGCCATTTCCCCCTTAGG