CX294199
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_CITSI (30S ribosomal protein S3, chloroplastic OS=Citrus sinensis GN=rps3 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.247e-24 Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 2 Query: 104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV Sbjct: 52 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 99 HSP 2 Score: 36.965 bits (84), Expect = 6.247e-24 Identity = 15/15 (100.00%), Postives = 15/15 (100.00%), Query Frame = 1 Query: 19 AKPKNYCEGLQEDQK 63 AKPKNYCEGLQEDQK Sbjct: 24 AKPKNYCEGLQEDQK 38
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_VITVI (30S ribosomal protein S3, chloroplastic OS=Vitis vinifera GN=rps3 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.840e-20 Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 2 Query: 104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247 RISSGVEGIARIEIQKRIDLIQVIIY+GFPKLL+E +PRRIEELQMNV Sbjct: 52 RISSGVEGIARIEIQKRIDLIQVIIYMGFPKLLVEGKPRRIEELQMNV 99 HSP 2 Score: 30.4166 bits (67), Expect = 2.840e-20 Identity = 14/22 (63.64%), Postives = 17/22 (77.27%), Query Frame = 1 Query: 4 GHYGR--AKPKNYCEGLQEDQK 63 GH+ A+PKNY +GLQEDQK Sbjct: 17 GHHSLWFAQPKNYSKGLQEDQK 38
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_AETGR (30S ribosomal protein S3, chloroplastic OS=Aethionema grandiflora GN=rps3 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 4.806e-20 Identity = 42/48 (87.50%), Postives = 48/48 (100.00%), Query Frame = 2 Query: 104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247 RISSG+EGIARIEIQKRIDLIQVIIY+GFPKLL+E++PRR+EELQMNV Sbjct: 52 RISSGMEGIARIEIQKRIDLIQVIIYMGFPKLLIEDKPRRVEELQMNV 99 HSP 2 Score: 30.4166 bits (67), Expect = 4.806e-20 Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1 Query: 19 AKPKNYCEGLQEDQK 63 A+PK YCEGL+ED+K Sbjct: 24 AQPKKYCEGLEEDKK 38
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_AETCO (30S ribosomal protein S3, chloroplastic OS=Aethionema cordifolium GN=rps3 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 4.806e-20 Identity = 42/48 (87.50%), Postives = 48/48 (100.00%), Query Frame = 2 Query: 104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247 RISSG+EGIARIEIQKRIDLIQVIIY+GFPKLL+E++PRR+EELQMNV Sbjct: 52 RISSGMEGIARIEIQKRIDLIQVIIYMGFPKLLIEDKPRRVEELQMNV 99 HSP 2 Score: 30.4166 bits (67), Expect = 4.806e-20 Identity = 11/15 (73.33%), Postives = 14/15 (93.33%), Query Frame = 1 Query: 19 AKPKNYCEGLQEDQK 63 A+PK YCEGL+ED+K Sbjct: 24 AQPKKYCEGLEEDKK 38
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_PANGI (30S ribosomal protein S3, chloroplastic OS=Panax ginseng GN=rps3 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 3.936e-19 Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 2 Query: 104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247 +ISS VEGIARIEIQKRIDLIQVIIY+GFPKLL+E+RPR IEELQMN+ Sbjct: 52 KISSSVEGIARIEIQKRIDLIQVIIYMGFPKLLIESRPRGIEELQMNL 99 HSP 2 Score: 31.9574 bits (71), Expect = 3.936e-19 Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 1 Query: 4 GHYGR--AKPKNYCEGLQEDQK 63 GH+ A+PKNY EGLQEDQK Sbjct: 17 GHHSLWFAQPKNYSEGLQEDQK 38
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_HELAN (30S ribosomal protein S3, chloroplastic OS=Helianthus annuus GN=rps3 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 6.656e-19 Identity = 39/48 (81.25%), Postives = 46/48 (95.83%), Query Frame = 2 Query: 104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247 + SSGVEGIARIEIQKRIDLIQ+IIY+GFPK+L+E+RPR IEELQMN+ Sbjct: 52 KTSSGVEGIARIEIQKRIDLIQIIIYMGFPKILIESRPRGIEELQMNL 99 HSP 2 Score: 31.9574 bits (71), Expect = 6.656e-19 Identity = 15/22 (68.18%), Postives = 17/22 (77.27%), Query Frame = 1 Query: 4 GHYGR--AKPKNYCEGLQEDQK 63 GH+ A+PKNY EGLQEDQK Sbjct: 17 GHHSLWFAQPKNYSEGLQEDQK 38
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_OLIPU (30S ribosomal protein S3, chloroplastic OS=Olimarabidopsis pumila GN=rps3 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.656e-19 Identity = 41/48 (85.42%), Postives = 48/48 (100.00%), Query Frame = 2 Query: 104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247 RISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNV Sbjct: 52 RISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNV 99 HSP 2 Score: 26.5646 bits (57), Expect = 8.656e-19 Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1 Query: 19 AKPKNYCEGLQEDQK 63 A+PK Y EGL+ED+K Sbjct: 24 AQPKKYSEGLEEDKK 38
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_NASOF (30S ribosomal protein S3, chloroplastic OS=Nasturtium officinale GN=rps3 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.656e-19 Identity = 41/48 (85.42%), Postives = 48/48 (100.00%), Query Frame = 2 Query: 104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247 RISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNV Sbjct: 52 RISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNV 99 HSP 2 Score: 26.5646 bits (57), Expect = 8.656e-19 Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1 Query: 19 AKPKNYCEGLQEDQK 63 A+PK Y EGL+ED+K Sbjct: 24 AQPKKYSEGLEEDKK 38
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_LEPVR (30S ribosomal protein S3, chloroplastic OS=Lepidium virginicum GN=rps3 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.656e-19 Identity = 41/48 (85.42%), Postives = 48/48 (100.00%), Query Frame = 2 Query: 104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247 RISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNV Sbjct: 52 RISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNV 99 HSP 2 Score: 26.5646 bits (57), Expect = 8.656e-19 Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1 Query: 19 AKPKNYCEGLQEDQK 63 A+PK Y EGL+ED+K Sbjct: 24 AQPKKYSEGLEEDKK 38
BLAST of CX294199 vs. ExPASy Swiss-Prot
Match: RR3_CRUWA (30S ribosomal protein S3, chloroplastic OS=Crucihimalaya wallichii GN=rps3 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.656e-19 Identity = 41/48 (85.42%), Postives = 48/48 (100.00%), Query Frame = 2 Query: 104 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 247 RISSG+EGIARIEIQKRIDLIQ+IIY+GFPKLL+E++PRR+EELQMNV Sbjct: 52 RISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNV 99 HSP 2 Score: 26.5646 bits (57), Expect = 8.656e-19 Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1 Query: 19 AKPKNYCEGLQEDQK 63 A+PK Y EGL+ED+K Sbjct: 24 AQPKKYSEGLEEDKK 38 The following BLAST results are available for this feature:
BLAST of CX294199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 58
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294199 ID=CX294199; Name=CX294199; organism=Citrus clementina; type=EST; length=371bpback to top |