CX295026
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPOB2_METVS (DNA-directed RNA polymerase subunit B'' OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpoB2 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.529e-17 Identity = 55/182 (30.22%), Postives = 95/182 (52.20%), Query Frame = 3 Query: 3 RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR-DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 RA +IL + L ++ + + KC Y+ M + +E L DDKD+ NKRL+L+G L+ EDLF+ +++ K + L + + ++ Q VR D +T + ++TGN + R G++Q+L R S++ T+ + RV +S+ R L +QWG +CP +TP+ Sbjct: 289 RAETILCNYLLPHMGIESEKLGAKCKYLGRMAKNSIELYLGSRVEDDKDHYANKRLKLAGDLM----EDLFRHSFNQLIKDIKYQLERQAIRNKEPSIQAAVRSDVLTERMRHAMATGN-----WVGGRTGVSQLLDRTSYLATVSQLRRVVSPLSRSQPHFEARDLHATQWGKICPSETPE 461
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPOB2_HALSA (DNA-directed RNA polymerase subunit B'' OS=Halobacterium salinarium GN=rpoB2 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.255e-16 Identity = 51/159 (32.08%), Postives = 86/159 (54.09%), Query Frame = 3 Query: 72 KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR-DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 K +Y+ M E L + DDKD+ NKRL++SG L+ +DLF+T ++++ + V L + + +R +VR D +T LE ++TGN+ R G++Q++ R F+G L H+ R+ +S+ R L +QWG +CP +TP+ Sbjct: 321 KAYYLCRMAEACFELALGRREADDKDHYANKRLKVSGDLM----KDLFRTALNKLARDVKYQLERANMRNRELTVNTVVRSDVLTERLEHPIATGNW-----VGGRSGVSQLVDRTDFMGVLSHLRRLRSPLSRSQPHFEARDLHATQWGRICPSETPE 470
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPOB_SULAC (DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius GN=rpoB PE=3 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16 Identity = 50/181 (27.62%), Postives = 91/181 (50.28%), Query Frame = 3 Query: 3 RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 +A ++ FL ++ + + K +Y+A + +++E L + DDKD+ NKR+ L+G L + LF FK + ++ ++ R R L+ + D IT + L+TGN + R G++Q+L R +++ L H+ RV + + R L +QWG +CP +TP+ Sbjct: 286 KAEQVIDKYFLPHLGTSPEDRKKKGYYLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLE---KSKVRGRRLSLTALVRADIITERIRHALATGN-----WVGGRTGVSQLLDRTNWLSMLSHLRRVVSSLARGQPNFEARDLHGTQWGRMCPFETPE 458
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPOB2_METTW (DNA-directed RNA polymerase subunit B'' OS=Methanobacterium thermoautotrophicum (strain Winter) GN=rpoB2 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.812e-15 Identity = 52/182 (28.57%), Postives = 93/182 (51.10%), Query Frame = 3 Query: 3 RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKP-SRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 RA ++ L ++ + K Y+A M +++ + + DKD+ NKRL +SG L+ EDLF+ + + + + L + +R + Q + D ++ L+ ++TGN+ R G++Q+L R S++GTL HM RV +S+ R L P+Q+G +CP +TP+ Sbjct: 307 RAEDVIDRYLLPHIGTEPDKRLEKAVYLAEMTEMLLQVISGERKPHDKDHYTNKRLRVSGDLM----EDLFRVAFTSLTRDMSYRLERSLARGKEPSVKQAVRSDVLSENLKHAIATGNW-----VGGRAGVSQLLDRTSYMGTLSHMRRVVSPLSRSQPHFEARDLHPTQFGKICPNETPE 479
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPOB2_METTH (DNA-directed RNA polymerase subunit B'' OS=Methanobacterium thermoautotrophicum GN=rpoB2 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.037e-15 Identity = 52/182 (28.57%), Postives = 91/182 (50.00%), Query Frame = 3 Query: 3 RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKP-SRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 RA ++ L ++ K Y+A M +++ + + DKD+ NKRL +SG L+ EDL + + + + + L + +R + Q + D +T L+ ++TGN+ R G++Q+L R S++GTL HM RV +S+ R L P+Q+G +CP +TP+ Sbjct: 312 RAEDVIDRYLLPHIGTEPEKRLEKATYLAEMTEMLLQVISGERRPHDKDHYTNKRLRVSGDLM----EDLLRVAFTSLSRDMSYQLERSLARGKEPSVKQAVRSDVLTENLKHAIATGNW-----VGGRAGVSQLLDRTSYMGTLSHMRRVVSPLSRSQPHFEARDLHPTQFGKICPNETPE 484
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPOB_THEAC (DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum GN=rpoB PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.273e-15 Identity = 45/158 (28.48%), Postives = 86/158 (54.43%), Query Frame = 3 Query: 72 KCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 K Y+ M R ++E L DDKD++ NKR++L+G L+ LF F++++ +++ ++ +R + + +D +T + +STGN+ R G++Q+L R+S + T+ H+ R+ +++ R L P+QWG +CP +TP+ Sbjct: 357 KAIYLGRMARSLLELSLGIRKEDDKDHLANKRIKLAGDLMDELFRSAFQSVMKDLKYQLE---KTYNRKRGIKIRPAVRQDLLTQRVLHAMSTGNWIGGR-----TGVSQLLDRVSNLSTISHLRRIISPLTRTQPHFEARDLHPTQWGRICPNETPE 506
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPO2_MIMIV (DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga mimivirus GN=RPO2 PE=1 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 2.004e-14 Identity = 53/170 (31.18%), Postives = 94/170 (55.29%), Query Frame = 3 Query: 72 KCFYVAVMLRRMVEAMLNKD-------AMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQK---TVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRV-SPQFEKS-RKVSGPRALQPSQWGMLCPCDTPK 545 K Y+ M+ ++++ L DD+D + NKR++L+G+L+ LF+ + M+++ K T +I KP ++ I +SI GL + LSTGNF RKG++Q+L R++ + +L +M RV +P + S K++ PR L +Q+G +CP ++P+ Sbjct: 355 KAHYICYMIHKLLKCYLRGAREVEEYRGCDDRDSMVNKRIDLTGRLLGGLFKQFYDKMLNDCNKIFRTKNIDDKKPP-----NIIPHIKPNSIEQGLRQALSTGNFG----SQSRKGLSQMLNRMNHLHSLSYMRRVITPTVDASTMKMTSPRHLHNTQYGSMCPLESPE 515
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPOB2_METJA (DNA-directed RNA polymerase subunit B'' OS=Methanocaldococcus jannaschii GN=rpoB2 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.215e-13 Identity = 49/182 (26.92%), Postives = 91/182 (50.00%), Query Frame = 3 Query: 3 RAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVR-DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 RA ++L + L ++ V +F K ++ +M R +E DDKD+ KR +L+G L+ EDLF+ S++ K + L + + ++ Q VR D +T ++ ++TG + + G++Q+L R S++ T + R+ +S+ R L + WG +CP +TP+ Sbjct: 289 RAETVLCNYLLPHLGVTKEDFPKKIRFLGIMARNALELYFGYRGEDDKDHYAYKRAKLAGDLM----EDLFRYAFSQLVKDIKYQLERQTLRNKTPSIQAAVRSDILTERIKHAMATGTW-----VGGKTGVSQLLDRTSYLATNSQLRRIVSPLSRSQPHFEARELHGTHWGKICPSETPE 461 The following BLAST results are available for this feature:
BLAST of CX295026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX295026 ID=CX295026; Name=CX295026; organism=Citrus clementina; type=EST; length=592bpback to top |