CX295026
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPC2_MOUSE (DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus GN=Polr3b PE=2 SV=2) HSP 1 Score: 204.912 bits (520), Expect = 2.421e-52 Identity = 103/180 (57.22%), Postives = 136/180 (75.56%), Query Frame = 3 Query: 6 AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 A +L L +VPV NFR KC Y AVM+RR++ A + +DD+DY GNKRLEL+GQL+SLLFEDLFK SE++K D ++ K R+++FD+ + + +D IT G+ +STGN+ +KRFKM R+G+TQVL+RLS+I LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTP+ Sbjct: 309 ARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPE 486
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPC2_HUMAN (DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens GN=POLR3B PE=1 SV=2) HSP 1 Score: 204.912 bits (520), Expect = 2.421e-52 Identity = 103/180 (57.22%), Postives = 136/180 (75.56%), Query Frame = 3 Query: 6 AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 A +L L +VPV NFR KC Y AVM+RR++ A + +DD+DY GNKRLEL+GQL+SLLFEDLFK SE++K D ++ K R+++FD+ + + +D IT G+ +STGN+ +KRFKM R+G+TQVL+RLS+I LG MTR+S QFEK+RKVSGPR+LQPSQWGMLCP DTP+ Sbjct: 309 ARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPK-QRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPE 486
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPC2_DICDI (DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium discoideum GN=polr3b PE=3 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 9.200e-52 Identity = 98/180 (54.44%), Postives = 134/180 (74.44%), Query Frame = 3 Query: 6 AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 A IL V L +VPV NFR K Y+++M+RR++ A +K +DDKDY GNKR+ELSGQL+SLLFED FK SE++K+VD ++K +R+ DL + I D+IT G +S+G +++KRF+M R G++QVL+RLS+I +G MTR+ QFEK+RKV+GPR+LQPSQWGMLCP DTP+ Sbjct: 323 ARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNKRIELSGQLISLLFEDCFKKFQSELKKSVDQAIAKANRAENLDLPKLIRTDTITNGFTHAISSGQWNLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQFEKTRKVAGPRSLQPSQWGMLCPSDTPE 502
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPC2_YEAST (DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae GN=RET1 PE=1 SV=2) HSP 1 Score: 198.364 bits (503), Expect = 2.266e-50 Identity = 100/173 (57.80%), Postives = 132/173 (76.30%), Query Frame = 3 Query: 33 LANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFD--LSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 +A++ V +FR K Y+A+M RR+V AM N +DD+DYVGNKRLEL+GQL+SLLFEDLFK ++ + ++D +L KP+R+ +D LS + ++IT GL R +STGN+ +KRFKM R G+T VL+RLS+I LG MTR+S QFEKSRKVSGPRALQPSQ+GMLC DTP+ Sbjct: 332 IAHLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINVHSNNITSGLNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPE 504
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPC2_SCHPO (DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe GN=rpc2 PE=2 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 6.593e-50 Identity = 101/182 (55.49%), Postives = 134/182 (73.63%), Query Frame = 3 Query: 6 AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDL-SQFIVR-DSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 A +L V LA++ V N FRPK Y+ +M RR++ AM++ +DD+DYVGNKRLEL+GQL++LLFEDLFK S+++ +D +L KP R+ FD +Q V D IT G+ R LSTGN+ +KRFKM R G+T VL+RLS+I LG MTR++ QFEK+RKVSGPR+LQ SQ+GMLC DTP+ Sbjct: 334 ALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVHSDHITQGMVRALSTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPE 515
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPC2_DROME (DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster GN=RpIII128 PE=1 SV=2) HSP 1 Score: 193.741 bits (491), Expect = 5.582e-49 Identity = 98/180 (54.44%), Postives = 133/180 (73.89%), Query Frame = 3 Query: 6 AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 A +L LA+VPV N N + K YV++M+RR++ A L+K DD+DY GNKRLEL+G L+S++FEDLFK M E++ D + K ++++FD+ + + IT GLE +S+GN+ +KRFKM R G+TQVL+RLS+I LG MTRV+ QFEK+RKVSGPR+LQPSQWGMLCP DTP+ Sbjct: 315 ARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKV-KAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPE 493
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPB2_CAEEL (DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans GN=rpb-2 PE=2 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 7.094e-28 Identity = 65/181 (35.91%), Postives = 109/181 (60.22%), Query Frame = 3 Query: 6 AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 A IL+ L +V V + K F++ M+ R++ A L + +DD+D++GNKRL+L+G L++ LF LF+ ++ E++ T ++K + F L + +IT GL +L+TGN+ D K+ R G++QVL RL++ TL H+ R + + K++ PR L +QWGM+CP +TP+ Sbjct: 345 AREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINK---NDDFALDVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPE 522
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPB2_DROME (DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila melanogaster GN=RpII140 PE=2 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.024e-26 Identity = 71/185 (38.38%), Postives = 108/185 (58.38%), Query Frame = 3 Query: 6 AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 A IL+ L +V V + K +++ M+ R++ A L + +DD+D+ GNKRL+L+G L++ LF LFK ++ EV QK +D R F+L I + IT GL +L+TGN+ D K+ R G++QVL RL+F TL H+ RV+ + K++ PR L + WGMLCP +TP+ Sbjct: 340 AKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFID-------RGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPE 517
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPB2_MOUSE (DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b PE=2 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 4.303e-25 Identity = 66/185 (35.68%), Postives = 108/185 (58.38%), Query Frame = 3 Query: 6 AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 A +L+ L +V V + K +++ M+ R++ A L + +DD+D+ GNKRL+L+G L++ LF +FK ++ EV QK +D R F+L I I+ GL+ +L+TGN+ D K+ R G++QVL RL+F TL H+ R++ + K++ PR L + WGM+CP +TP+ Sbjct: 339 AKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPE 516
BLAST of CX295026 vs. ExPASy Swiss-Prot
Match: RPB2_HUMAN (DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.303e-25 Identity = 66/185 (35.68%), Postives = 108/185 (58.38%), Query Frame = 3 Query: 6 AFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV----QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNF-DVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPK 545 A +L+ L +V V + K +++ M+ R++ A L + +DD+D+ GNKRL+L+G L++ LF +FK ++ EV QK +D R F+L I I+ GL+ +L+TGN+ D K+ R G++QVL RL+F TL H+ R++ + K++ PR L + WGM+CP +TP+ Sbjct: 339 AKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFID-------RGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPE 516 The following BLAST results are available for this feature:
BLAST of CX295026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 28
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295026 ID=CX295026; Name=CX295026; organism=Citrus clementina; type=EST; length=592bpback to top |