CX295108

Overview
NameCX295108
Unique NameCX295108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14055 contig Ccv1_Contig14055:642..1384. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL1_PONAB (Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.481e-24
Identity = 70/229 (30.57%), Postives = 118/229 (51.53%), Query Frame = 3
Query:   99 WQDLCDQMLMIRGIALYLDRTYVKQT-----PNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG--------------IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTG 725
            W+D      ++ GI  YL+R +V++        +  ++ + L  +R  L  +  +  +    +L++IE+ER GE ++  L++ +++ +  LG              +Y ESFE  FL  T  FY  E  +++QQ+ V +Y+K  E RL EE  R  +YL  ST+  L    E+ L+E+H+  I    F  L+D  + EDL RMY+L SR+ + L  L++ L  +I   G
Sbjct:  123 WEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCL--FRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLE-IFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQG 348          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL1_MOUSE (Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.481e-24
Identity = 70/229 (30.57%), Postives = 118/229 (51.53%), Query Frame = 3
Query:   99 WQDLCDQMLMIRGIALYLDRTYVKQT-----PNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG--------------IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTG 725
            W+D      ++ GI  YL+R +V++        +  ++ + L  +R  L  +  +  +    +L++IE+ER GE ++  L++ +++ +  LG              +Y ESFE  FL  T  FY  E  +++QQ+ V +Y+K  E RL EE  R  +YL  ST+  L    E+ L+E+H+  I    F  L+D  + EDL RMY+L SR+ + L  L++ L  +I   G
Sbjct:  123 WEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCL--FRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLE-IFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQG 348          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL1_HUMAN (Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.481e-24
Identity = 70/229 (30.57%), Postives = 118/229 (51.53%), Query Frame = 3
Query:   99 WQDLCDQMLMIRGIALYLDRTYVKQT-----PNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG--------------IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTG 725
            W+D      ++ GI  YL+R +V++        +  ++ + L  +R  L  +  +  +    +L++IE+ER GE ++  L++ +++ +  LG              +Y ESFE  FL  T  FY  E  +++QQ+ V +Y+K  E RL EE  R  +YL  ST+  L    E+ L+E+H+  I    F  L+D  + EDL RMY+L SR+ + L  L++ L  +I   G
Sbjct:  123 WEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCL--FRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLE-IFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQG 348          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL3_CAEEL (Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.638e-23
Identity = 70/253 (27.67%), Postives = 127/253 (50.20%), Query Frame = 3
Query:   30 AAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGI-----YSESFEKPFLECTSEFYAAEGMKYMQ-QSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAIL---DKGFTMLMDGHRTEDLQRMYSLFSRV--------NALESLRQALAMYIRRTGHGIV 737
            A++R  + +S +   FL  V   W D    M+MIR I +Y+DR YV Q  +V  ++++GL  +R  +   + +  +    LL +I+ +R    ++   + +   M  +LGI     Y + FE+P L+ TS++Y      ++   +D   YL  VEI +H+E  R   YLD  T   ++   +  ++  HI  I+   + G   +++  + EDL R++ +F R+          L++L +A++ Y+  TG  IV
Sbjct:   83 ASVRIRIIESMNSGSFLETVAESWADHTVAMVMIRDILMYMDRIYVAQNNHVLPVYNLGLDAYRTEILRQNGIGDRIRDALLELIKLDRKSNQINWHGIKNACDMLISLGIDSRTVYEDEFERPLLKETSDYYRDVCKNWLSGDNDACFYLAQVEIAMHDEASRASRYLDKMTEAKILQVMDDVMVAEHIQTIVYMQNGGVKFMLEHKKIEDLTRIFRIFKRIGDSVTVPGGGLKALLKAVSEYLNETGSNIV 335          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL1_DICDI (Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.649e-23
Identity = 69/227 (30.40%), Postives = 116/227 (51.10%), Query Frame = 3
Query:   99 WQDLCDQMLMIRGIALYLDRTYVKQT-----PNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG------------IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTG 725
            W      M  I  I  Y++R ++K+        V  ++ + L ++R  L  ++ ++ +    LL +IE ER G  ++  L+  ++  + +LG            +Y   FE+ FL  T  +Y  E  K++ ++ V DY+K VE RL+EE +R   YL  +T   LIA  E+ L+E+H+  I ++ F  L++  +  DL RMYSL SR+   LE LR  L  +++  G
Sbjct:  116 WDRYTSAMKYINNIFQYMNRYWIKREIDDGKKEVYEIFILSLVIWRDCL--FTPLKQRLTNSLLDIIESERNGYQINTHLIKGVINGYVSLGLNREKPKETILQVYKSGFEELFLTATENYYTNESAKFISENSVADYMKKVETRLNEEVKRVQQYLHQNTESELIAKCEKVLIEKHVEVIWNE-FQTLLEKDKIPDLTRMYSLLSRIPRGLEPLRTTLEKHVQNVG 339          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL3_SCHPO (Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.224e-23
Identity = 75/229 (32.75%), Postives = 111/229 (48.47%), Query Frame = 3
Query:   75 FLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYS-EVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG-------IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDK---GFTMLMDGHRTEDLQRMYSLFSRVN-ALESLRQALAMYIRRTG 725
            FLS +   W+D    M MI  +  YLD+ Y K    V  + + G+ +FR+ +   S E+  K V  +L ++  ER G  ++R L+N  L M  +L        +Y   F   FL  T  FY  E    +    V +YLK  E R  EE ER   YL      PL++  E +LL +H+  +L+    GF  ++D    E LQ +Y  FSRV   ++SL++ LA Y+   G
Sbjct:  121 FLSSLVNSWKDHIVSMQMISSVLKYLDKVYSKSADKV-PVNENGIYIFREVVLLNSFEIGEKCVETILILVYLERKGNTINRPLINDCLDMLNSLPSENKKETLYDVLFAPKFLSYTRNFYEIESSTVIGVFGVVEYLKKAEKRFEEEKERSKNYLFTKIASPLLSVVEDELLSKHLDDLLENQSTGFFSMIDSSNFEGLQLVYESFSRVELGVKSLKKYLAKYVAHHG 348          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL1_CAEEL (Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.533e-21
Identity = 66/235 (28.09%), Postives = 119/235 (50.64%), Query Frame = 3
Query:   99 WQDLCDQMLMIRGIALYLDRTYVKQT-----PNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGI------------------YSESFEKPFLECTSEFYAAEGMKYMQQS-DVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGH 728
            W++      ++ GI  YL+R ++++       N+  ++ + L ++++ L  +++++ K +  +L +I  ER G  ++   ++ +++    LG+                  Y E FE  FLE T  FY  E   ++    +V DY+  VE RL++E +RC LYL+ ST+ PL    E  L+   +   L + F  L+   R +DL RM+ L  RV N L+ LR++L  +I + GH
Sbjct:  119 WENFRISSKVMDGIFAYLNRHWIRRELDEGHENIYMVYTLALVVWKRNL--FNDLKDKVIDAMLELIRSERTGSMINSRYISGVVECLVELGVDDSETDAKKDAETKKLAVYKEFFEVKFLEATRGFYTQEAANFLSNGGNVTDYMIKVETRLNQEDDRCQLYLNSSTKTPLATCCESVLISNQLD-FLQRHFGGLLVDKRDDDLSRMFKLCDRVPNGLDELRKSLENHIAKEGH 350          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL1_SCHPO (Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.937e-21
Identity = 72/238 (30.25%), Postives = 109/238 (45.80%), Query Frame = 3
Query:   78 LSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPN-----VRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGI------------YSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIV 737
            L+   + W         I  +  YL+R +VK         V  ++ + L  +  ++  +S +    +  LL M  ++RL E  D   +   +   T+L              Y   FE  F+E T  FYA E  +Y+    + DYLK  EIRL EE E   LYL  ST KPL+   E  L+ +H   +L   F  ++D + +ED+ RMY L SR  N L+ LRQ    +++R+G   V
Sbjct:  111 LAAYAKYWTRFTTSARFINHLFGYLNRYWVKLKNRFTETLVYDIYTLCLVSWHHHV--FSHIRDSLLQNLLYMFTKKRLYEPTDMKYVEVCVDSITSLSFDKTDMTKPNLSSYKTFFETNFIENTKNFYAKESSEYLASHSITDYLKKAEIRLAEEEELVRLYLHESTLKPLLEATEDVLIAQH-EEVLHNDFARMLDQNCSEDIIRMYRLMSRTPNGLQPLRQTFEEFVKRSGFAAV 345          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL1_ARATH (Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.776e-20
Identity = 65/248 (26.21%), Postives = 125/248 (50.40%), Query Frame = 3
Query:   21 HISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGI-----YSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDK---GFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIV 737
            +I++ +   + +  D  +   L +R W +    +  +     YLDR ++ +  ++  L ++GL  FR  +  Y+E+  K    ++ ++++ER GE +DR LL ++L ++  +G+     Y E FE   L+ TS +Y+ +   ++Q+   PDY+   E  L +E ER   YL  S+   L+   + +LL    S +L+K   G   L+   + +DL RMY L+ ++   LE +      ++   G+ +V
Sbjct:   73 YINSTVLPALREKHDEFMLRELFKR-WSNHKVMVRWLSRFFYYLDRYFIARR-SLPPLNEVGLTCFRDLV--YNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIYVEIGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAHYLHSSSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPVANIFKQHVTAEGNALV 316          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL1_DROME (Cullin homolog 1 OS=Drosophila melanogaster GN=lin19 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.121e-19
Identity = 69/246 (28.05%), Postives = 118/246 (47.97%), Query Frame = 3
Query:   72 VFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQT-----PNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG--------------IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERC--------LLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNA-LESLRQALAMYIRRTG 725
            V LS   + W+       ++ GI  YL+R +VK+        +  ++ + L  ++ +L  +  +       +L+ IE ER G+ ++R+L+  +++ +  L               +Y ++FE  F+  TS FY  E   ++  + V +YLKHVE RL EE +R         L YL  +T   L +T E  L+E+H+  I    F  L++  R +DL+RMYSL +  +  L  L+  L  +I   G
Sbjct:  105 VLLSRYTKQWKSYQFSSTVLDGICNYLNRNWVKRECEEGQKGIYKIYRLALVAWKGHL--FQVLNEPVTKAVLKSIEEERQGKLINRSLVRDVIECYVELSFNEEDTDAEQQKLSVYKQNFENKFIADTSAFYEKESDAFLSTNTVTEYLKHVENRLEEETQRVRGFNSKNGLSYLHETTADVLKSTCEEVLIEKHLK-IFHTEFQNLLNADRNDDLKRMYSLVALSSKNLTDLKSILENHILHQG 347          
The following BLAST results are available for this feature:
BLAST of CX295108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
CUL1_PONAB1.481e-2430.57Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1[more]
CUL1_MOUSE1.481e-2430.57Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1[more]
CUL1_HUMAN1.481e-2430.57Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2[more]
CUL3_CAEEL1.638e-2327.67Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 S... [more]
CUL1_DICDI3.649e-2330.40Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 ... [more]
CUL3_SCHPO6.224e-2332.75Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1... [more]
CUL1_CAEEL1.533e-2128.09Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 S... [more]
CUL1_SCHPO9.937e-2130.25Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1... [more]
CUL1_ARATH3.776e-2026.21Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1[more]
CUL1_DROME7.121e-1928.05Cullin homolog 1 OS=Drosophila melanogaster GN=lin... [more]

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Properties
Property NameValue
Genbank descriptionC05068F09SK DroRLeaf1 Citrus clementina cDNA clone C05068F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295108 ID=CX295108; Name=CX295108; organism=Citrus clementina; type=EST; length=743bp
GATTCGGCCGAGGGTGAAGACATATATCTGCTGCAATTCGATCGTTGGTC
GGTCAAAGCCCTGACTTGGTGGTTTTCTTATCACTGGTTGAGAGATGCTG
GCAGGATCTTTGTGATCAGATGTTGATGATTCGTGGTATAGCTTTGTATC
TAGATAGAACATATGTGAAACAAACACCAAATGTGCGTTCATTGTGGGAC
ATGGGATTGCAGCTTTTCCGGAAATATCTTTCTTCATATTCAGAAGTTGA
GCACAAAACTGTCACTGGTCTTTTAAGGATGATTGAGAGGGAAAGATTAG
GTGAAGCTGTTGATAGGACACTCCTTAATCATCTATTGAAGATGTTCACC
GCTCTGGGAATTTACTCAGAAAGCTTTGAGAAACCATTTCTTGAGTGCAC
GTCGGAGTTTTATGCCGCCGAAGGCATGAAATACATGCAGCAATCAGATG
TTCCAGATTACTTGAAGCACGTGGAGATAAGGTTGCATGAAGAACATGAA
AGATGTTTACTATACCTTGATGTAAGCACAAGAAAGCCACTTATAGCAAC
TGCCGAAAGGCAACTTCTTGAACGACATATATCTGCGATTCTCGACAAGG
GGTTCACAATGCTGATGGATGGCCATCGTACTGAGGACCTACAGAGGATG
TACTCACTATTTTCAAGGGTCAATGCTCTCGAATCATTAAGGCAGGCCCT
TGCTATGTACATTCGTAGAACTGGGCATGGCATTGTCATGGAT
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