CX295108

Overview
NameCX295108
Unique NameCX295108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14055 contig Ccv1_Contig14055:642..1384. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL6_CAEEL (Cullin-6 OS=Caenorhabditis elegans GN=cul-6 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.625e-16
Identity = 62/200 (31.00%), Postives = 98/200 (49.00%), Query Frame = 3
Query:  147 YLDRTYVKQ-----TPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGH 728
            YL+R +V +        +  ++ + L +++     +   + KT+  +L +I  ER G  ++ T ++ +++  T L IY  SFE  FL+ T  FY  E +    +  V +Y+  VE RL +E  R   YL  ST   LI + E  L+   +   L   F  L++  + E L RMYSL  RV + LE LR  L   I + GH
Sbjct:  110 YLNRNFVSKKVEDKNGEIVEIYKLALDIWKAEF--FDNFKVKTIDAILELILLERCGSTINSTHISSVVECLTELDIYKVSFEPQFLDATKLFYKQEVLN--SKETVIEYMITVENRLFQEEYRSRRYLGPSTNDLLIDSCESILISDRLK-FLHSEFERLLEARKDEHLTRMYSLCRRVTHGLEDLRVYLEKRILKEGH 304          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL5_DICDI (Cullin-5 OS=Dictyostelium discoideum GN=culE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.257e-15
Identity = 49/172 (28.49%), Postives = 92/172 (53.49%), Query Frame = 3
Query:  231 SSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG-------IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTG 725
            ++++ +++K    LL++I+ +R G + +  +L+  L+ +  LG       IY   FE+ FL+ T  FY AE   +++++ V +Y++HV  R+ +E  R   Y+ +ST + L       L+  +      K   +L++  ++ DL  MYSL SRVN L  L+   + +I+  G
Sbjct:  142 TAFNPLKNKLSVSLLQIIKNDRTGFSTNLQVLSDSLECYVQLGPEKNKLEIYQSCFEQQFLQETETFYKAESADFIEKNGVCEYMRHVYNRIEQETNRVNQYMPISTLEKLTKILNNVLISNYKEQFASKFLDILIE-DKSSDLVMMYSLLSRVNHLTPLKNIFSDFIKSEG 312          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL4_SCHPO (Cullin-4 OS=Schizosaccharomyces pombe GN=cul4 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 49/221 (22.17%), Postives = 100/221 (45.25%), Query Frame = 3
Query:   81 SLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRVNALESLRQALAMYIRRTGHGIVMD 743
            ++V  CW    +++ +++ I  Y+D+T++   P+  ++ ++ L LFR+ L +   ++   +  LL+  E     ++ D   L   + M     +YS  F   +L   S FY  E  + +Q+  + +YL++    L  E      +  V  +K +  T +R L+  H+   L KG +  ++       + +Y+L    +  E L Q  +  +   G  +V D
Sbjct:  105 TVVVGCWNKWLERVEIVQNIFYYMDKTFLSHHPDYPTIEELSLSLFREKLMAVKNIQIPFLNSLLQSFENLHSSKSTDHAYLQDAMLMLHRTEMYSSVFVPMYLVMLSRFYDTESSQKIQELPLEEYLEYAMSSLEREDAYVEKFDIVRDKKSIRETVQRCLITSHLDT-LTKGISQFIEKRDAHSCKLLYALLQFNHETEYLIQPWSDCLVDVGFKLVND 324          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL5_MOUSE (Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.839e-13
Identity = 57/205 (27.80%), Postives = 103/205 (50.24%), Query Frame = 3
Query:  168 KQTPNVRSLWDMGLQLFRKYL------SSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFT--------ALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDV----STRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTG 725
            KQ+ N +S  +M   + RK +      S +S ++++     ++++  ERLGEA D  L+  + + +          L IY ++FEK +L+ T  FY  +   Y+QQ+ V +Y+K+ + +L EE +R L YL+     ++ + L+      L+      IL +   M+   + TE L  M+SL  +V N +E + + L  +I   G
Sbjct:  121 KQSSNKKS--NMEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMI-KRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAG 322          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL5_RABIT (Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 50/178 (28.09%), Postives = 91/178 (51.12%), Query Frame = 3
Query:  231 SSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFT--------ALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDV----STRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTG 725
            S +S ++++     ++++  ERLGEA D  L+  + + +          L IY ++FEK +L+ T  FY  +   Y+QQ+ V +Y+K+ + +L EE +R L YL+     ++ + L+      L+      IL +   M+   + TE L  M+SL  +V N +E + + L  +I   G
Sbjct:  146 SIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMI-KRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAG 322          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL5_PONAB (Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 50/178 (28.09%), Postives = 91/178 (51.12%), Query Frame = 3
Query:  231 SSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFT--------ALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDV----STRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTG 725
            S +S ++++     ++++  ERLGEA D  L+  + + +          L IY ++FEK +L+ T  FY  +   Y+QQ+ V +Y+K+ + +L EE +R L YL+     ++ + L+      L+      IL +   M+   + TE L  M+SL  +V N +E + + L  +I   G
Sbjct:  146 SIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMI-KRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAG 322          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL5_HUMAN (Cullin-5 OS=Homo sapiens GN=CUL5 PE=1 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 9.960e-13
Identity = 50/178 (28.09%), Postives = 91/178 (51.12%), Query Frame = 3
Query:  231 SSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFT--------ALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDV----STRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTG 725
            S +S ++++     ++++  ERLGEA D  L+  + + +          L IY ++FEK +L+ T  FY  +   Y+QQ+ V +Y+K+ + +L EE +R L YL+     ++ + L+      L+      IL +   M+   + TE L  M+SL  +V N +E + + L  +I   G
Sbjct:  146 SIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMI-KRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAG 322          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL5_RAT (Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 56/205 (27.32%), Postives = 102/205 (49.76%), Query Frame = 3
Query:  168 KQTPNVRSLWDMGLQLFRKYL------SSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFT--------ALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDV----STRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTG 725
            KQ+ N +S  +M   + RK +      S +S ++++     ++++  ERLGEA D  L+  + + +          L IY ++FEK +L+ T  FY  +   Y+QQ+ V +Y+K+ + +L EE +R L YL+     ++ + L+      L+      IL +   M+   + TE L  M+SL  +V   +E + + L  +I   G
Sbjct:  121 KQSSNKKS--NMEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMI-KRNETEKLHLMFSLMDKVPGGIEPMLKDLEEHIISAG 322          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CDC53_YEAST (Cell division control protein 53 OS=Saccharomyces cerevisiae GN=CDC53 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 52/233 (22.32%), Postives = 101/233 (43.35%), Query Frame = 3
Query:   75 FLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQ--TPNVRSLWDMGLQLFRKYLS-SYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALGI------------YSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSR-VNALESLRQALAMYIRRTG 725
            FL    + W+      + +     Y++R +V++  +   R ++D+       +    +   +   +  LL  +   R G+ + R+ ++  +K   ALGI            Y + FEKPFL+ T E+Y      Y+++  V +Y+      +  E +   +Y D  T+KPL     + L+  HI   L+  F +L+D    E +  +Y+L  R    +  +      Y+++TG
Sbjct:  109 FLQFYVKRWKRFTIGAIFLNHAFDYMNRYWVQKERSDGKRHIFDVNTLCLMTWKEVMFDPSKDVLINELLDQVTLGREGQIIQRSNISTAIKSLVALGIDPQDLKKLNLNVYIQVFEKPFLKKTQEYYTQYTNDYLEKHSVTEYIFEAHEIIKREEKAMTIYWDDHTKKPLSMALNKVLITDHIEK-LENEFVVLLDARDIEKITSLYALIRRDFTLIPRMASVFENYVKKTG 340          
BLAST of CX295108 vs. ExPASy Swiss-Prot
Match: CUL2_DICDI (Cullin-2 OS=Dictyostelium discoideum GN=culB PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 44/191 (23.04%), Postives = 93/191 (48.69%), Query Frame = 3
Query:  177 PNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTALG-------IYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTG 725
            P+V  +  +GL ++++ L  + +++ + +  +  +I+++R GE V    ++  ++    L        +Y   +E  +LE T +FY  E + ++  S +  Y+K  E R+ EE +R   YL+ S+   +       L+E+H   +  +    L D  + +++  MY L SR+   L  + + +  YI+  G
Sbjct:  127 PDVYEIQILGLMIWKERL--FFKIKDRVLKCVEILIQKDRDGELVQHQFISQFMESLIKLDSVDKDRTLYLIEYEASYLENTRQFYTRESVAFIASSGISSYMKKAETRIDEEEQRSQKYLNSSSHDKMRRLLHSILIEKHKELLQSECINYLKD-EKLDEIYNMYKLLSRIEGGLAPVLETVQKYIQHVG 314          
The following BLAST results are available for this feature:
BLAST of CX295108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
CUL6_CAEEL9.625e-1631.00Cullin-6 OS=Caenorhabditis elegans GN=cul-6 PE=1 S... [more]
CUL5_DICDI1.257e-1528.49Cullin-5 OS=Dictyostelium discoideum GN=culE PE=3 ... [more]
CUL4_SCHPO2.007e-1322.17Cullin-4 OS=Schizosaccharomyces pombe GN=cul4 PE=1... [more]
CUL5_MOUSE5.839e-1327.80Cullin-5 OS=Mus musculus GN=Cul5 PE=1 SV=3[more]
CUL5_RABIT9.960e-1328.09Cullin-5 OS=Oryctolagus cuniculus GN=CUL5 PE=2 SV=... [more]
CUL5_PONAB9.960e-1328.09Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3[more]
CUL5_HUMAN9.960e-1328.09Cullin-5 OS=Homo sapiens GN=CUL5 PE=1 SV=4[more]
CUL5_RAT2.898e-1227.32Cullin-5 OS=Rattus norvegicus GN=Cul5 PE=1 SV=3[more]
CDC53_YEAST8.432e-1222.32Cell division control protein 53 OS=Saccharomyces ... [more]
CUL2_DICDI1.438e-1123.04Cullin-2 OS=Dictyostelium discoideum GN=culB PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC05068F09SK DroRLeaf1 Citrus clementina cDNA clone C05068F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295108 ID=CX295108; Name=CX295108; organism=Citrus clementina; type=EST; length=743bp
GATTCGGCCGAGGGTGAAGACATATATCTGCTGCAATTCGATCGTTGGTC
GGTCAAAGCCCTGACTTGGTGGTTTTCTTATCACTGGTTGAGAGATGCTG
GCAGGATCTTTGTGATCAGATGTTGATGATTCGTGGTATAGCTTTGTATC
TAGATAGAACATATGTGAAACAAACACCAAATGTGCGTTCATTGTGGGAC
ATGGGATTGCAGCTTTTCCGGAAATATCTTTCTTCATATTCAGAAGTTGA
GCACAAAACTGTCACTGGTCTTTTAAGGATGATTGAGAGGGAAAGATTAG
GTGAAGCTGTTGATAGGACACTCCTTAATCATCTATTGAAGATGTTCACC
GCTCTGGGAATTTACTCAGAAAGCTTTGAGAAACCATTTCTTGAGTGCAC
GTCGGAGTTTTATGCCGCCGAAGGCATGAAATACATGCAGCAATCAGATG
TTCCAGATTACTTGAAGCACGTGGAGATAAGGTTGCATGAAGAACATGAA
AGATGTTTACTATACCTTGATGTAAGCACAAGAAAGCCACTTATAGCAAC
TGCCGAAAGGCAACTTCTTGAACGACATATATCTGCGATTCTCGACAAGG
GGTTCACAATGCTGATGGATGGCCATCGTACTGAGGACCTACAGAGGATG
TACTCACTATTTTCAAGGGTCAATGCTCTCGAATCATTAAGGCAGGCCCT
TGCTATGTACATTCGTAGAACTGGGCATGGCATTGTCATGGAT
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