CX295316

Overview
NameCX295316
Unique NameCX295316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295316 vs. ExPASy Swiss-Prot
Match: PATT5_SOLTU (Patatin-T5 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 73/191 (38.22%), Postives = 114/191 (59.69%), Query Frame = 2
Query:   14 GKVRSFDLIDGGVAA-NNPTLVALNEVTKEINRGSSDYYAINAMDYTRFLVISLGTGAPKTEVK-YDAIKAAKWGVLGWLSSESSTPLVDVFMQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR 580
            G    F+L+DG VA  ++P L++++  TK + +    + +I +++Y + L++SLGTG      K Y A + AKWG   W+       +  +   +SS MTD+++STAF+AL S+N YLR+Q++ LTG    +D A++ N++ LV +GE LLKK V+K N E          T +EAL R AK LS  K++R
Sbjct:  206 GDKYEFNLVDGAVATVDDPALLSISVATK-LAQVDPKFASIKSLNYKQMLLLSLGTGTTSEFDKTYTAEETAKWGTARWM-----LVIQKMTSAASSYMTDYYLSTAFQALDSQNNYLRVQENALTGTTTELDDASEANMQLLVQVGEDLLKKSVSKDNPE----------TYEEALKRFAKLLSDRKKLR 380          
BLAST of CX295316 vs. ExPASy Swiss-Prot
Match: PAT13_SOLTU (Patatin-13 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.664e-25
Identity = 71/191 (37.17%), Postives = 113/191 (59.16%), Query Frame = 2
Query:   14 GKVRSFDLIDGGVAA-NNPTLVALNEVTKEINRGSSDYYAINAMDYTRFLVISLGTGA-PKTEVKYDAIKAAKWGVLGWLSSESSTPLVDVFMQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR 580
            G    F+L+DG VA   +P L++++  T+      + + +I +++Y + L++SLGTG   + +  + A + AKWG L W+       +  +   +SS MTD+++ST F+ LHS+N YLR+Q++ LTG     D A++ N+E LV +GE LLKKPV+K + E          T +EAL R AK LS  K++R
Sbjct:  207 GDKYEFNLVDGAVATVADPALLSVSVATRRAEEDPA-FASIRSLNYKQLLLLSLGTGTNSEFDKTHTAQETAKWGALQWM-----LVIQQMTEAASSYMTDYYLSTVFQDLHSQNNYLRVQENALTGTTTKADDASEANMELLVQVGETLLKKPVSKDSPE----------TYEEALKRFAKLLSDRKKLR 381          
BLAST of CX295316 vs. ExPASy Swiss-Prot
Match: PAT16_SOLTU (Patatin-16 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 71/191 (37.17%), Postives = 110/191 (57.59%), Query Frame = 2
Query:   14 GKVRSFDLIDGGVAA-NNPTLVALNEVTKEINRGSSDYYAINAMDYTRFLVISLGTGAPKTEVK-YDAIKAAKWGVLGWLSSESSTPLVDVFMQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR 580
            G     +L+DG VA   +P L++++  T+      + + +I +++Y + L++SLGTG      K + A + AKWG L W+       +  +   +SS MTD+++ST F+ LHS+N YLR+Q++ LTG     D A++ N+E L  +GE LLKKPV+K N E          T +EAL R AK LS  K++R
Sbjct:  206 GDKYELNLVDGAVATVADPALLSVSVATRRAQEDPA-FASIRSLNYKKMLLLSLGTGTTSEFDKTHTAEETAKWGALQWM-----LVIQQMTEAASSYMTDYYLSTVFQDLHSQNNYLRVQENPLTGTTTKADDASEANMELLAQVGENLLKKPVSKDNPE----------TYEEALKRFAKLLSDRKKLR 380          
BLAST of CX295316 vs. ExPASy Swiss-Prot
Match: PAT17_SOLCD (Patatin-17 OS=Solanum cardiophyllum PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.818e-24
Identity = 72/191 (37.70%), Postives = 114/191 (59.69%), Query Frame = 2
Query:   14 GKVRSFDLIDGGVAA-NNPTLVALNEVTKEINRGSSDYYAINAMDYTRFLVISLGTGAPKTEVK-YDAIKAAKWGVLGWLSSESSTPLVDVFMQSSSDMTDFHISTAFKALHSENGYLRIQDDTLTGDEASVDVATKKNLESLVGIGERLLKKPVTKVNFETGLCEPCGQGTNDEALIRLAKDLSKEKRIR 580
            G    F+L+DG VA   +P L++++  T+   +  + + +I +++Y + L++SLGTG      K Y A +AA W  + W+       +  +   +SS MTD+++STAF+AL S+N YLR+Q++ LTG    +D A++ N+E LV +GE LLKKPV++ N E          T +EAL R AK LS  K++R
Sbjct:  206 GDEYEFNLVDGAVATVADPALLSISVATRLAQKDPA-FASIRSLNYKKMLLLSLGTGTTSEFDKTYTAKEAATWTAVHWM-----LVIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPE----------TYEEALKRFAKLLSDRKKLR 380          
The following BLAST results are available for this feature:
BLAST of CX295316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PATT5_SOLTU3.664e-2538.22Patatin-T5 OS=Solanum tuberosum PE=1 SV=1[more]
PAT13_SOLTU3.664e-2537.17Patatin-13 OS=Solanum tuberosum PE=2 SV=1[more]
PAT16_SOLTU1.066e-2437.17Patatin-16 OS=Solanum tuberosum PE=2 SV=1[more]
PAT17_SOLCD1.818e-2437.70Patatin-17 OS=Solanum cardiophyllum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05070H10SK PhIFruit1 Citrus clementina cDNA clone C05070H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295316 ID=CX295316; Name=CX295316; organism=Citrus clementina; type=EST; length=720bp
CAAAGATTGCACAGGAAAAGTGAGAAGTTTTGATCTCATTGACGGTGGCG
TTGCCGCTAACAATCCGACTCTAGTTGCTTTGAACGAGGTAACCAAAGAA
ATCAATCGGGGAAGTTCTGACTACTATGCAATCAACGCAATGGATTACAC
TCGGTTTCTGGTGATATCGTTAGGGACTGGTGCGCCAAAAACTGAAGTGA
AGTACGACGCCATTAAAGCAGCTAAGTGGGGTGTGTTGGGTTGGTTGTCG
AGTGAAAGTTCGACTCCATTGGTGGATGTGTTCATGCAATCAAGCAGCGA
CATGACGGACTTTCACATTTCCACTGCTTTTAAAGCCCTTCATTCTGAAA
ACGGTTATCTTCGCATCCAGGATGATACACTAACTGGAGACGAGGCTTCA
GTTGATGTTGCCACCAAAAAGAACCTCGAGAGTCTTGTGGGAATTGGTGA
AAGACTGCTGAAGAAACCAGTTACAAAGGTCAATTTCGAAACTGGACTAT
GTGAGCCTTGTGGTCAGGGTACTAATGACGAGGCTCTCATAAGACTAGCA
AAAGATCTTTCTAAGGAGAAGCGGATTCGTGACATGAGATCACCGCAAGG
AAAGGTTGCAAAAGCCACCAATTGAACAATATAAATCGCCCAGCACAAAG
GATTATATATTTTTTAATTCATTTAAATGTTGTTAATTGTAGTGTTATGT
GATAATTGACCAATTTGTCA
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