CX295716

Overview
NameCX295716
Unique NameCX295716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:530..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 8.170e-64
Identity = 132/216 (61.11%), Postives = 146/216 (67.59%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTF-AEEVNAAFRESADNELKGILSVCDEPLVSVDFRC 644
            VVSNR+P+ LPW +LGID+VIEGTGVFVD  GAGKHIQAGA KV+ITAP KG DIPTYV+GVN   Y  D   IISNASCTTNCLAPF KVLD++FGI+KGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN           KK   AE+VN AFR++A+  +KGIL VCD PLVSVDFRC
Sbjct:  156 VVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGASKVIITAPAKGADIPTYVMGVNEQDYGHDVANIISNASCTTNCLAPFAKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVINVEKKGLTAEDVNEAFRKAANGPMKGILDVCDAPLVSVDFRC 371          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.296e-63
Identity = 133/216 (61.57%), Postives = 145/216 (67.13%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSK-KTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRC 644
            VVSNR+P+ LPW +LGID+VIEGTGVFVD  GAGKHIQAGAKKV+ITAP KG DIPTYVVGVN   Y  D   IISNASCTTNCLAPFVKVLD++ GI+KGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN           K    AE+VN AFR++A   LKG+L VCD PLVSVDFRC
Sbjct:  159 VVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGSDIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNIEKVGVTAEDVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRC 374          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.639e-59
Identity = 119/214 (55.61%), Postives = 142/214 (66.36%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 641
            VVSNRNP+ LPW ++ ID+V+E TGVFVD  GAGKHIQAGAKKVLITAPGKG+ + T+VVGVN   Y  D+  I+SNASCTTNC+APF+KVLD +FG+++G MTTTHSYTGDQ                  NIVPT+T                 NGIALRVPTPN          SKKTF EEVN A  ++A+  +KGI+   DEPLVS D+R
Sbjct:  154 VVSNRNPLELPWKEMEIDIVVEATGVFVDAVGAGKHIQAGAKKVLITAPGKGEGVGTFVVGVNDHLYSHDKFDIVSNASCTTNCMAPFMKVLDDEFGVVRGMMTTTHSYTGDQRLLDAGHRDLRRARSAALNIVPTTTGAAKAVALVVPTLAGKLNGIALRVPTPNVSVCDVVMQVSKKTFKEEVNGALLKAANGSMKGIIKYSDEPLVSCDYR 367          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.302e-58
Identity = 117/214 (54.67%), Postives = 141/214 (65.89%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 641
            +VSNRNP+ LPW ++ ID+V+E TGVFVD  GAGKHI+AGAKKVLITAPGKGD I T+VVGVN   Y  D+  I+SNASCTTNC+APF+KVLD +FG+++G MTTTHSYTGDQ                  NIVPT+T                 NGIALRVPTPN          +KKTF EEVN A  ++++  +KGI+   DEPLVS D R
Sbjct:  152 IVSNRNPLQLPWKEMNIDIVVEATGVFVDAPGAGKHIEAGAKKVLITAPGKGDGIGTFVVGVNEKDYSHDKYDIVSNASCTTNCMAPFMKVLDDEFGVVRGMMTTTHSYTGDQRLLDAGHRDLRRARSAALNIVPTTTGAAKAVALVVPSLKGKLNGIALRVPTPNVSVCDVVMQVNKKTFKEEVNGALLKASEGAMKGIIKYSDEPLVSCDHR 365          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 6.699e-58
Identity = 122/213 (57.28%), Postives = 137/213 (64.32%), Query Frame = 3
Query:    9 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 641
            VS+RNP+NLPW +  +DLVIE TGVFV  EGA KH+QAGAKKVLITAPGKG +I TYVVGVNA  YK +E  +ISNASCTTNCLAPF KV++  FGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIALRVPTPN           K T AE+VN   +E+A+  LKG+L   D  LVS DFR
Sbjct:   76 VSDRNPLNLPWAEWNVDLVIEATGVFVTHEGATKHVQAGAKKVLITAPGKGPNIGTYVVGVNAHEYKHEEYEVISNASCTTNCLAPFGKVINDNFGIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELQGKLNGIALRVPTPNVSVVDLVVQVEKNTIAEQVNGVLKEAANTSLKGVLEYTDLELVSSDFR 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.888e-52
Identity = 112/212 (52.83%), Postives = 132/212 (62.26%), Query Frame = 3
Query:    9 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 641
            VS+RNP NLPW +  IDL+IE TGVFV +EGA KHI AGAKKVLITAPGK +  T+V+GVN   Y  +   IISNASCTTNCLAP  KVL+ KFGIIKG+MTTTHSYTGDQ                  NIVPTST                 NG+ALRVPTPN           K+T  EEVN A +++++  LKGIL   +  LVS D++
Sbjct:   77 VSDRNPENLPWKEWEIDLIIEATGVFVSKEGATKHINAGAKKVLITAPGKNEDGTFVMGVNHHDYDHNLHNIISNASCTTNCLAPIAKVLNDKFGIIKGSMTTTHSYTGDQRLLDASHRDLRRARAAAINIVPTSTGAAKAVALVIPELKGKLNGVALRVPTPNVSMVDFVVQVEKRTITEEVNQALKDASEGPLKGILDYSELQLVSSDYQ 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 7.174e-52
Identity = 110/212 (51.89%), Postives = 131/212 (61.79%), Query Frame = 3
Query:    9 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 641
            VS+RNP NLPW +  IDL+IE TGVF  +EGA KH+ AGAKKVLITAPGK +  T+V+GVN   Y  +   IISNASCTTNCLAP  KVL+ KFGIIKG+MTTTHSYTGDQ                  NIVPTST                 NG+ALRVPTPN           K+T  EEVN A +++++  LKGIL   +  LVS D++
Sbjct:   77 VSDRNPENLPWKEWEIDLIIESTGVFTSKEGALKHVNAGAKKVLITAPGKNEDGTFVIGVNHHDYDHNVHHIISNASCTTNCLAPIAKVLNDKFGIIKGSMTTTHSYTGDQRLLDASHRDLRRARAAAINIVPTSTGAAKAVALVIPELKGKLNGVALRVPTPNVSMVDFVVQVEKRTITEEVNQALKDASEGPLKGILDYSELQLVSSDYQ 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 194.897 bits (494), Expect = 3.332e-49
Identity = 100/212 (47.17%), Postives = 130/212 (61.32%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V + R+P NL WG++G+D+V+E TG F  RE A KH++AGAKKV+I+AP K +  T V+GVN D Y P    +ISNASCTTNCLAPF KVL ++FGI++G MTT HSYT DQ                  +I+PT+T                 NG+A+RVPTPN           K+   EEVNAA + +A+ ELKGIL+  +EPLVS D+
Sbjct:   74 VKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDY 285          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.185e-46
Identity = 98/210 (46.67%), Postives = 123/210 (58.57%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            V +  +P  LPW DLG+D VIE TGVF +RE A  H+QAGAKKV+ITAP KG+  T V+G N D  KP+  IIS ASCTTN +AP VKVL +KFGI+ G +TT HSYT DQ                  NI+PT+T                 +G+A+RVPTP+           K+T  EEVNA  +E+ +  LKGI+   DEP+VS D
Sbjct:   75 VFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSIAPIVKVLHEKFGIVSGMLTTVHSYTNDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSD 284          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.504e-46
Identity = 98/212 (46.23%), Postives = 125/212 (58.96%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAY-KPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V + R+P  L WG  G+++V+E TG F  R  A KH++AGAKKV+I+AP   +  T V+GVN D Y   +  +ISNASCTTNCLAPF KVL+ KFGI +G MTT HSYT DQ                  NI+PTST                 NG A+RVPTPN          +++  AEEVNAA +E+A+ +LKGIL   +EPLVS D+
Sbjct:   74 VSAERDPAKLSWGKQGVEIVVESTGFFTKRADAAKHLEAGAKKVIISAPANEEDITIVMGVNEDKYDAANHDVISNASCTTNCLAPFAKVLNDKFGIKRGMMTTVHSYTNDQQILDLPHKDYRRARAAAENIIPTSTGAAKAVSLVLPELKGKLNGGAMRVPTPNVSLVDLVAELNQEVTAEEVNAALKEAAEGDLKGILGYSEEPLVSGDY 285          
The following BLAST results are available for this feature:
BLAST of CX295716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3PB_ARATH8.170e-6461.11Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL5.296e-6361.57Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_GRAVE4.639e-5955.61Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_CHOCR2.302e-5854.67Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P2_SYNY36.699e-5857.28Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3P2_ANASP1.888e-5252.83Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANAVT7.174e-5251.89Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P_BACST3.332e-4947.17Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_THEMA1.185e-4646.67Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]
G3P1_BACSU4.504e-4646.23Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionC05075B06SK DroRLeaf1 Citrus clementina cDNA clone C05075B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295716 ID=CX295716; Name=CX295716; organism=Citrus clementina; type=EST; length=685bp
GAGGGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTG
GGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGG
TGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCC
CCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCT
TACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTG
CCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGG
GAACCATGACCACCACACACTCGTACACTGGCGACCAAAGGCTACTCGAT
GCTAGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGT
CCCAACATCAACTGGTGCGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCAC
TCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTC
TCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGA
GGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCC
TCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGAT
GTATCCTCAACCGTTGATTCATCTCTCACACTTGT
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