CX295716

Overview
NameCX295716
Unique NameCX295716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:530..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 6.519e-37
Identity = 84/208 (40.38%), Postives = 113/208 (54.33%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            R+P NLPWG L ID+ ++ TGVF + + A KHI AGAKKV+ITAP     P +VVGVN   Y PD+ I+SNASCTTNCLAP  KV++  FGI +G MTT HS T  Q                   NI+P+ST                  G+A RVPT +           K+   +++  A + +A+  +KG+L   ++ +VS DF
Sbjct:   78 RDPANLPWGSLKIDVAVDSTGVFKELDTAQKHIDAGAKKVVITAPSSS-APMFVVGVNHTKYTPDKKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSMTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLEKEATYDQIKKAVKAAAEGPMKGVLGYTEDAVVSSDF 284          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 8.514e-37
Identity = 83/209 (39.71%), Postives = 114/209 (54.55%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 641
            ++P  L WG++G D+V+E TG+F+ +EGA KHI AGAKKV+++AP K D P +V GVN   YK  E IISNASCTTNCLAP  KVL+ K+GI +G MTT H+ T  Q                   NI+P+ST                  G++ RVPT +           K    +E+ A  +  +   LKG+L   ++ +V+ DFR
Sbjct:   79 KDPAELKWGEVGADVVVESTGIFLTKEGAQKHIDAGAKKVIMSAPSKDDTPMFVYGVNHGTYK-GEAIISNASCTTNCLAPVAKVLNDKWGIKRGLMTTVHAATATQKTVDGPSNKDWRGGRGILENIIPSSTGAAKAVGVVIPQLNKKLTGMSFRVPTSDVSVVDLTVELEKAASYDEICAEMKAQSQGALKGVLGYTEDKVVATDFR 286          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_CHLTR (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia trachomatis GN=gap PE=3 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 8.514e-37
Identity = 83/211 (39.34%), Postives = 114/211 (54.03%), Query Frame = 3
Query:    9 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            ++ ++   LPW DL +D+V+E TG+FV+R+   KH+ +GAK+VLITAP KGD+PT+V+GVN   + P + IISNASCTTNCLAP  KVL   FGI +G MTT H+ T  Q                   NI+P ST                  G+A RVP  +          S  T  E +  A + +A+  +K I+   +E +VS DF
Sbjct:   74 LAEKDVQKLPWKDLDVDVVVESTGLFVNRDDVAKHLDSGAKRVLITAPAKGDVPTFVMGVNHQQFDPADVIISNASCTTNCLAPLAKVLLDNFGIEEGLMTTVHAATATQSVVDGPSRKDWRGGRGAFQNIIPASTGAAKAVGLCLPELKGKLTGMAFRVPVADVSVVDLTVKLSSATTYEAICEAVKHAANTSMKNIMYYTEEAVVSSDF 284          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PC_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chondrus crispus GN=GAPC PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.514e-37
Identity = 82/212 (38.68%), Postives = 115/212 (54.25%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V ++R+P  +PW     D ++E TGVF  ++ A  H + GAKKV+I+AP K D P +V GVN   Y PD  IISNASCTTNCLAP VKV+ +K+GI +G MTT H+ T  Q                   NI+P+ST                  G+A RVPTP+          + +T  E++ A  + +AD+ +KGI+   ++ +VS DF
Sbjct:   76 VFAHRDPAEIPWATAAADYIVEATGVFTLKDKAAAHFKGGAKKVVISAPSK-DAPMFVCGVNEAKYTPDLDIISNASCTTNCLAPLVKVIHEKYGIEEGLMTTVHATTATQKTVDGPSNKDWRGGRGRGRNIIPSSTGAAKAVGKVMPELNGKLTGMAFRVPTPDVSVVDLTVRLASETTYEDIKATMKAAADDSMKGIMKYTEDAVVSTDF 286          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.514e-37
Identity = 84/213 (39.44%), Postives = 115/213 (53.99%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDF 638
            V + R+P  +PWG  G D VIE TGVF  ++ A  H++ GAKKV+I+AP   D P +VVGVN D Y  D  +ISNASCTTNCLAP  KV+   +GI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPTP+           K    +E+ A  ++++++ ELKGIL   ++ +VS DF
Sbjct:   76 VHAERDPAQIPWGSHGADYVIESTGVFTTKDAASAHLKGGAKKVIISAPS-ADAPMFVVGVNLDKYTSDLTVISNASCTTNCLAPLAKVIHDNYGILEGLMTTVHATTATQKTVDGPSNKDWRGGRGAGANIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKPASYDEIKATIKKASESEELKGILGYTEDQVVSTDF 287          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.514e-37
Identity = 84/212 (39.62%), Postives = 118/212 (55.66%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V   ++P NLPWG LG+D+VI+ TGVF + + A KH+ AGAKKV+ITAP K   P +VVGVN D Y   E I+SNASCTTNCLAP  K+++ +FGI +  MTT HS T  Q                   NI+P+ST                  G+A RVPT +          +K+   +E+ AA ++++  +LK ++   ++ +VS DF
Sbjct:   74 VFQEKDPANLPWGKLGVDIVIDSTGVFKELDSAQKHLDAGAKKVVITAPSK-TAPMFVVGVNEDKYN-GETIVSNASCTTNCLAPIAKIINDEFGIDEALMTTVHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLAKEATYDEIKAAVKKASQGKLKNVVGYTEDSVVSSDF 283          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.112e-36
Identity = 83/209 (39.71%), Postives = 113/209 (54.07%), Query Frame = 3
Query:   12 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            + RNP  +PW + G + ++E TGVF   E A  H++ GAKKV+I+AP   D P +V+GVN  +Y  D  +ISNASCTTNCLAP  KV++ +F II+G MTT HSYT  Q                   NI+P+ST                  G+A+RVPT N           K    +E+  A + +A NEL+GILS  ++ +VS D
Sbjct:   78 NKRNPEEIPWAETGAEYIVESTGVFTTTEKAKAHLKGGAKKVIISAPS-ADAPMFVMGVNHKSYTTDLEVISNASCTTNCLAPLAKVINDEFTIIEGLMTTIHSYTATQKTVDGPSAKDWRGGRTAAQNIIPSSTGAAKAVGKVIPALNGKLTGMAMRVPTANVSVVDLTCRIEKSATYDEIKKAIKIAAGNELQGILSYTEDEIVSTD 285          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.112e-36
Identity = 81/212 (38.21%), Postives = 110/212 (51.89%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            +   R+P N+ WGD G + V+E TGVF   E AG H++ GAK+V+I+AP   D P +V+GVN D Y     I+SNASCTTNCLAP  KV+   FGI++G MTT H+ T  Q                   NI+P ST                  G+A RVPTPN           K    E++    +++++  LKGIL   ++ +VS DF
Sbjct:   74 IFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS-ADAPMFVMGVNQDKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYEDIKKVVKQASEGPLKGILGYTEDQVVSCDF 284          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.112e-36
Identity = 82/208 (39.42%), Postives = 111/208 (53.37%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            RNP  +PW + G + V+E TGVF D+E A  H++ GAKKV+I+AP K D P +V GVN D Y  D  I+SNASCTTNCLAP  KV+   FGII+G MTT H+ T  Q                   NI+P+ST                  G++ RVPT +           K    + + +A + +++ +LKGI+   +E LVS DF
Sbjct:   82 RNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSK-DAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.112e-36
Identity = 82/208 (39.42%), Postives = 111/208 (53.37%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            RNP  +PW + G + V+E TGVF D+E A  H++ GAKKV+I+AP K D P +V GVN D Y  D  I+SNASCTTNCLAP  KV+   FGII+G MTT H+ T  Q                   NI+P+ST                  G++ RVPT +           K    + + +A + +++ +LKGI+   +E LVS DF
Sbjct:   82 RNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSK-DAPMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDF 288          
The following BLAST results are available for this feature:
BLAST of CX295716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P1_YEAST6.519e-3740.38Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P_RALSO8.514e-3739.71Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P_CHLTR8.514e-3739.34Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3PC_CHOCR8.514e-3738.68Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_RHIRA8.514e-3739.44Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]
G3P1_KLULA8.514e-3739.62Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_ERYGR1.112e-3639.71Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P_CRIGR1.112e-3638.21Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3PC_ORYSJ1.112e-3639.42Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI1.112e-3639.42Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC05075B06SK DroRLeaf1 Citrus clementina cDNA clone C05075B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295716 ID=CX295716; Name=CX295716; organism=Citrus clementina; type=EST; length=685bp
GAGGGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTG
GGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGG
TGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCC
CCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCT
TACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTG
CCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGG
GAACCATGACCACCACACACTCGTACACTGGCGACCAAAGGCTACTCGAT
GCTAGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGT
CCCAACATCAACTGGTGCGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCAC
TCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTC
TCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGA
GGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCC
TCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGAT
GTATCCTCAACCGTTGATTCATCTCTCACACTTGT
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