CX295716

Overview
NameCX295716
Unique NameCX295716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:530..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P2_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MRSA252) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.112e-36
Identity = 91/213 (42.72%), Postives = 116/213 (54.46%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            +V++RNP NLPW +L ID+ I+ TG F   + A  HI+AGAKKVL+T P K G +   V GVN D    +   I SNASCTTNC+ P  KVL+ +FGI+ G MTT H+ T DQ                  +I+PTST                 +G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF
Sbjct:   74 LVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLTGPSKGGHVQMVVKGVNDDQLDIEAFDIFSNASCTTNCIGPVAKVLNNQFGIVNGLMTTVHAITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDF 283          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_MESAU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Mesocricetus auratus GN=GAPDH PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.452e-36
Identity = 81/213 (38.03%), Postives = 110/213 (51.64%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 641
            +   R+P N+ WGD G + V+E TGVF   E AG H++ GAK+V+I+AP   D P +V+GVN D Y     I+SNASCTT CLAP  KV+   FGI+KG MTT H+ T  Q                   NI+P ST                  G+A RVPTPN           K    E++    +++++  LKGIL   ++ +VS DF+
Sbjct:   64 IFQERDPTNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS-ADAPMFVMGVNHDKYDNSLKIVSNASCTTTCLAPLAKVIHDNFGIVKGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYEDIKKVVKQASEGPLKGILGYTEDQVVSCDFK 275          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.452e-36
Identity = 86/208 (41.35%), Postives = 109/208 (52.40%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            +NP  +PWG   +++VIE +G F   E A  H Q GAKKVLITAP   D P +V GVN  + K D+ + SNASCTTNCLAP  KV++ KFGI++G MTT HS T  Q                   NI+P+ST                  G++ RVPT N                EE+  A RE+A+ ELKG+L   DE +VS DF
Sbjct:   84 KNPAEIPWGASNVEVVIESSGAFTTMEKAHLHQQGGAKKVLITAPS-ADAPMFVYGVNHQSLKADQTVFSNASCTTNCLAPLTKVINDKFGIVRGLMTTVHSTTATQKTVDGPSGKAWRDGRAAAGNIIPSSTGAAKAVTAVIPELKGRLTGMSFRVPTLNVSVVDLTAELKTPATYEEICNAVREAANGELKGVLGYTDEQVVSSDF 290          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.452e-36
Identity = 82/212 (38.68%), Postives = 117/212 (55.19%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V + R+P  +PWG  G D V+E TGVF D++ A  H++ GAKKV+I+AP K D P +V+GVN + Y  DE I+SNASCTTNCLAP  KV++ KFGI++G MTT H+ T  Q                   NI+P++T                  G+A RVPT +           K    + +  A +E+++ ++KGIL   ++ +VS DF
Sbjct:   81 VYACRDPSEIPWGKHGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVMGVNENKYS-DEDIVSNASCTTNCLAPLAKVINDKFGILEGLMTTVHATTATQKTVDGPSSKDWRGGRSAATNIIPSATGAAKAVGKVLPELNGKLTGMAFRVPTTDVSVVDLTVRLEKPASYDAIKTAIKEASEGQMKGILGYTEDDVVSTDF 290          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.452e-36
Identity = 86/212 (40.57%), Postives = 116/212 (54.72%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V   R+P  LPWG+  +D+ I+ TGVF + + A KHI AGAKKV+ITAP     P +VVGVN D Y   E I+SNASCTTNCLAP  KV++  FGI +G M+T HS T  Q                   NI+P+ST                  G+A RVPT +          +K+   +E+ A  +++++NELKGIL   ++ +VS DF
Sbjct:   74 VFQERDPATLPWGEHNVDIAIDSTGVFKELDSAQKHIDAGAKKVVITAP-SSTAPMFVVGVNEDKYN-GETIVSNASCTTNCLAPLAKVVNNAFGIEEGLMSTIHSITATQKTVDGPSQKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLAKEATYDEIKAVIKKASENELKGILGYTEDAVVSSDF 283          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.452e-36
Identity = 86/208 (41.35%), Postives = 113/208 (54.33%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            R+P +LPWGD  ID+VIE TGVF  ++ A KHI AGAKKV+IT P     P +V GVN D Y  D  +ISNASCTTNCLAP  KVL   FGI +  M+T HS T  Q                   NI+P+ST                  G+A RVPT +          +K    +E+ AA +++++ E+KGIL+  ++ +VS DF
Sbjct:   78 RDPADLPWGDNDIDIVIEATGVFTAKDLAEKHITAGAKKVVITGPS-ATAPMFVKGVNDDKYTSDVTVISNASCTTNCLAPLAKVLQDNFGIEEALMSTVHSQTATQKTVDGPSKKDWRGGRTASANIIPSSTGAAKAVTKVLPELEGKLTGMAFRVPTVDVSVVDLTVRFAKDVTYDEIKAAIKKASEGEMKGILAYTEDAVVSTDF 284          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.897e-36
Identity = 85/214 (39.72%), Postives = 116/214 (54.21%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVL-DQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V + RNP +LPWG LG++ VIE TG+F  +  A  H++ GA+KV+I+AP  G   T V+GVN   Y P E  ++SNASCTTNCLAP V VL  + FG+  G MTT HSYT  Q                   NI+P++T                  G++ RVPTP+          ++ T  +E++AA + ++   +KGIL   DE LVS DF
Sbjct:   88 VKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPASGGAKTLVMGVNHHEYNPSEHHVVSNASCTTNCLAPIVHVLVKEGFGVQTGLMTTIHSYTATQKTVDGVSVKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTQGKLTGMSFRVPTPDVSVVDLTFTAARDTSIQEIDAALKRASKTYMKGILGYTDEELVSADF 301          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 152.14 bits (383), Expect = 2.477e-36
Identity = 81/212 (38.21%), Postives = 110/212 (51.89%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            +   R+P N+ WGD G + V+E TGVF   E AG H++ GAKKV+I+AP   D P +V+GVN + Y     I+SNASCTTNCLAP  KV+   FGI++G MTT H+ T  Q                   NI+P ST                  G+A RVPTPN           K    +E+    +++++  LKGIL   ++ +VS DF
Sbjct:   63 IFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKKVIISAPS-ADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDF 273          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.477e-36
Identity = 84/212 (39.62%), Postives = 111/212 (52.36%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V + +NP ++ WG  G D ++E TGVF   E A  H+Q GAKKV+I+AP   D P +VVGVN D Y     +ISNASCTTNCLAP  KV+  K+GI +G MTT H+ T  Q                   NI+P+ST                  G+A RVPT +           K+   +E+ A  +E+++  LKGIL   DE +VS DF
Sbjct:   75 VFAEKNPADIKWGSAGADYIVESTGVFTTVEKASLHLQGGAKKVVISAPS-ADAPMFVVGVNLDKYDSKYQVISNASCTTNCLAPLAKVIHDKYGIAEGLMTTVHATTATQKTVDGPSHKDWRGGRSVNNNIIPSSTGAAKAVGKVIPSLNGRLTGLAFRVPTLDVSVVDLVVRLEKEASYDEIVATVKEASEGPLKGILGFTDESVVSTDF 285          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_ENTAE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Enterobacter aerogenes GN=gap PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.477e-36
Identity = 80/212 (37.74%), Postives = 113/212 (53.30%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V + ++P NL W ++G+D+V E TG+F+  E A KHI AGAKKV++T P K + P +V G N + Y   + I+SN SCTTNCLAP  KV++  FGII+G MTT H+ T  Q                   NI+P+ST                  G+A RVPTPN           K    EE+  A + +++  +KG+L   ++ +VS DF
Sbjct:   59 VTAEKDPANLKWNEIGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVRGANFETY-AGQDIVSNRSCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAASYEEIKKAIKAASEGPMKGVLGYTEDDVVSTDF 269          
The following BLAST results are available for this feature:
BLAST of CX295716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P2_STAAR1.112e-3642.72Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P_MESAU1.452e-3638.03Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_MASBA1.452e-3641.35Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3PC_PHYPA1.452e-3638.68Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_KLULA1.452e-3640.57Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P1_CANGA1.452e-3641.35Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3PG_TRYCR1.897e-3639.72Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_SHEEP2.477e-3638.21Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_SCHCO2.477e-3639.62Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P_ENTAE2.477e-3637.74Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC05075B06SK DroRLeaf1 Citrus clementina cDNA clone C05075B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295716 ID=CX295716; Name=CX295716; organism=Citrus clementina; type=EST; length=685bp
GAGGGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTG
GGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGG
TGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCC
CCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCT
TACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTG
CCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGG
GAACCATGACCACCACACACTCGTACACTGGCGACCAAAGGCTACTCGAT
GCTAGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGT
CCCAACATCAACTGGTGCGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCAC
TCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTC
TCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGA
GGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCC
TCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGAT
GTATCCTCAACCGTTGATTCATCTCTCACACTTGT
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