CX295716

Overview
NameCX295716
Unique NameCX295716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:530..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_GIALA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giardia lamblia GN=GAP1 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.133e-31
Identity = 76/213 (35.68%), Postives = 108/213 (50.70%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V  +  P  +PWG   +D+V+E TG F  ++ A  HI  G K+V+I+AP   D P +V G N + Y P    +ISNASCTTNCLAP   V+++KFGI +G MTT H+ T  Q                   N++P+ST                  G+A RVP P+           K    +E+ A  +  ++NELKGI++  +E +VS DF
Sbjct:   75 VFKSMKPEEIPWGKTQVDIVLECTGRFTTKKDAELHITGGCKRVIISAPS-ADAPMFVCGCNLETYDPSTMKVISNASCTTNCLAPLAMVVNKKFGIKEGLMTTVHAVTATQLPVDGPSKKDWRGGRSCGANVIPSSTGAAKAVGKVLPALNGKLTGMAFRVPVPDVSVVDLTCTLEKDATYDEICAEIKRGSENELKGIMTYTNEDVVSSDF 286          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_ECHMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31
Identity = 79/204 (38.73%), Postives = 101/204 (49.51%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAF-RESADNELKGILSVCDEPLVSVDF 638
            +PW   G + ++E TG+    E A  H Q GAKKV+I+AP   D     VGVN + Y P   ++SNASCTTNCLAP  KV++  FGI++G MTT HSYT  Q                   NIVP ST                  G+A RVPTPN          SK    +++ AA  R S  + LK IL   ++ +VS DF
Sbjct:   84 VPWSQAGAEYIVESTGINTTVEKASAHFQGGAKKVIISAPS-ADSSHVRVGVNHEKYDPSMKVVSNASCTTNCLAPLAKVINDNFGIVEGLMTTVHSYTATQKVVDGPSKKAWRDGRTAAQNIVPASTGAAKRVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCKLSKPATYDQIKAAVKRASESSALKRILEYTEDQVVSTDF 286          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_ENT38 (D-erythrose-4-phosphate dehydrogenase OS=Enterobacter sp. (strain 638) GN=epd PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.092e-31
Identity = 77/203 (37.93%), Postives = 103/203 (50.74%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW +LG+D+V++ TGV+ +RE    H+ AGAKKVL + PG  D+  T V GVN    + +  I+SNASCTTNC+ P +K+LD  +GI  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF
Sbjct:   86 LPWRELGVDVVLDCTGVYGNREHGEAHLAAGAKKVLFSHPGGHDLDATVVYGVNHHELQAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNLLLQKAAQGSFHGIVDYTELPLVSVDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31
Identity = 75/209 (35.89%), Postives = 108/209 (51.67%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            + P  +PW  +G   V+E TGV++  + A  HI AGA++V+I+AP   D P +V+GVN + Y P    I+SNASCTTNCLAP  KV+ ++FGI++G MTT HSYT  Q                   NI+P ST                  G+A RVPTP+          ++      +  A + +A   + GIL+  ++ +VS DF
Sbjct:  151 KEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSP-DAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSYTATQKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDF 358          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31
Identity = 76/207 (36.71%), Postives = 103/207 (49.76%), Query Frame = 3
Query:   24 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            P  +PWGD G   V+E TGVF+  E A  HIQ GAK+V+++AP   D P +V+GVN D Y P    I+SNASCTTNCLAP  KV+   FGI +  MTT H+YT  Q                   NI+P ST                  G+A RVP  +          ++      +  + +++A   +KGIL   ++ +VS DF
Sbjct:   81 PAEIPWGDAGALYVVESTGVFLSIEKASAHIQGGAKRVVVSAPSP-DAPMFVMGVNQDKYDPSSMTIVSNASCTTNCLAPLAKVIHDNFGIEEALMTTVHAYTATQKTVDGPSAKAWRDGRGAHQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVADVSVVDLTCRLTRPASYANIKESVKKAAHGPMKGILGYTEDSVVSSDF 286          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_KLEP7 (D-erythrose-4-phosphate dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=epd PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31
Identity = 77/203 (37.93%), Postives = 101/203 (49.75%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW +L +D+V++ TGV+  RE    H+QAGAKKVL + PG  D+  T V GVN D  +    I+SNASCTTNC+ P +K+LD  +GI  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS DF
Sbjct:   86 LPWRELAVDVVLDCTGVYGSREHGEAHLQAGAKKVLFSHPGGNDLDATVVYGVNQDELRAGHRIVSNASCTTNCIIPIIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKACEVNQLLQKAAQGAFHGIVDYTELPLVSTDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_CITK8 (D-erythrose-4-phosphate dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=epd PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31
Identity = 76/203 (37.44%), Postives = 103/203 (50.74%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW +L ID+V++ TGV+ +RE    H+ AGAKKVL + PG  D+  T V GVN +  + +  I+SNASCTTNC+ P +K+LD  +GI  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF
Sbjct:   86 LPWRELSIDVVLDCTGVYGNREHGEAHLAAGAKKVLFSHPGSHDLDATVVFGVNQEQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYHSDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNQLLQKAAHGAFHGIVDYTELPLVSIDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_ERWCT (D-erythrose-4-phosphate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=epd PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.981e-31
Identity = 75/203 (36.95%), Postives = 101/203 (49.75%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW +L +D+V++ +GV+  RE    H+ AGAKKVL + PG  D+  T V GVN D  +    I+SNASCTTNC+ P +K+LD  FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N           K     E+NA  ++SA    +GI+   + PLVS DF
Sbjct:   86 LPWRELSVDIVLDCSGVYGSREDGEAHLAAGAKKVLFSHPGTTDLDATVVFGVNHDRLESGHRIVSNASCTTNCIIPVIKLLDDAFGIENGTVTTIHSSMNDQPVIDAYHHDLRRTRAASQSIIPVDTKLSAGITRIFPQFVDRFEAISVRVPTINVTAIDLSVSVRKAVNVNEINALLQKSAHESFRGIVDYTELPLVSADF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_STAES (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.117e-31
Identity = 75/186 (40.32%), Postives = 98/186 (52.69%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNAAFRESAD 581
            LPWGDL ID+V+E TG + D+E A  HI AGAKKVLI+AP KGD+ T V   N D     E ++S ASCTTN LAP  KVL  +FG+++G MTT H+YTGDQ                    NI+P ST                 +G A RVP              K+    ++VN+A ++++D
Sbjct:   83 LPWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVLISAPAKGDVKTIVFNTNHDTLDGSETVVSGASCTTNSLAPVAKVLSDEFGLVEGFMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLDKQDVTVDQVNSAMKQASD 268          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.117e-31
Identity = 75/186 (40.32%), Postives = 98/186 (52.69%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNAAFRESAD 581
            LPWGDL ID+V+E TG + D+E A  HI AGAKKVLI+AP KGD+ T V   N D     E ++S ASCTTN LAP  KVL  +FG+++G MTT H+YTGDQ                    NI+P ST                 +G A RVP              K+    ++VN+A ++++D
Sbjct:   83 LPWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVLISAPAKGDVKTIVFNTNHDTLDGSETVVSGASCTTNSLAPVAKVLSDEFGLVEGFMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLDKQDVTVDQVNSAMKQASD 268          
The following BLAST results are available for this feature:
BLAST of CX295716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P1_GIALA3.133e-3135.68Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giar... [more]
G3P_ECHMU4.092e-3138.73Glyceraldehyde-3-phosphate dehydrogenase OS=Echino... [more]
E4PD_ENT384.092e-3137.93D-erythrose-4-phosphate dehydrogenase OS=Enterobac... [more]
G3PT_HUMAN5.345e-3135.89Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_DANRE5.345e-3136.71Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
E4PD_KLEP75.345e-3137.93D-erythrose-4-phosphate dehydrogenase OS=Klebsiell... [more]
E4PD_CITK85.345e-3137.44D-erythrose-4-phosphate dehydrogenase OS=Citrobact... [more]
E4PD_ERWCT6.981e-3136.95D-erythrose-4-phosphate dehydrogenase OS=Erwinia c... [more]
G3P1_STAES9.117e-3140.32Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAEQ9.117e-3140.32Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC05075B06SK DroRLeaf1 Citrus clementina cDNA clone C05075B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295716 ID=CX295716; Name=CX295716; organism=Citrus clementina; type=EST; length=685bp
GAGGGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTG
GGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGG
TGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCC
CCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCT
TACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTG
CCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGG
GAACCATGACCACCACACACTCGTACACTGGCGACCAAAGGCTACTCGAT
GCTAGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGT
CCCAACATCAACTGGTGCGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCAC
TCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTC
TCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGA
GGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCC
TCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGAT
GTATCCTCAACCGTTGATTCATCTCTCACACTTGT
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