CX295716

Overview
NameCX295716
Unique NameCX295716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:530..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.313e-42
Identity = 95/212 (44.81%), Postives = 122/212 (57.55%), Query Frame = 3
Query:    9 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            +S RN  NLPW DLG+DLVIE TG+F  +E A KHIQAGAK+VLI+APGKGDIPT+V+GVN   + P++  +ISNASCTTNCLAP  KVL   FGI +G MTT H+ T  Q                   NI+P ST                  G+A RVP  +           K T  +++  A +++++ +LKGIL   DE +VS DF
Sbjct:   74 LSERNVQNLPWKDLGVDLVIECTGLFTKKEDAEKHIQAGAKRVLISAPGKGDIPTFVMGVNHKTFNPEKDFVISNASCTTNCLAPIAKVLLDNFGITEGLMTTVHAATATQLVVDGPSKKDWRGGRGCLQNIIPASTGAAKAVTLCLPELKGKLTGMAFRVPIEDVSVVDLTVRLDKSTTYDDICKAMKQASETDLKGILDYTDEQVVSSDF 285          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.313e-42
Identity = 92/212 (43.40%), Postives = 122/212 (57.55%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            ++++R+P  LPW +  ID+V+E TG F  ++ A  HI+AGAKKV++TAPGK +  T V+GVN D +  +   IISNASCTTNCLAP VKVLD++FGI  G MTT H+YT DQ                  +I+PT+T                 +G+ALRVP PN               AEEVN AF+ +A   + G+L   DEPLVS D+
Sbjct:   74 LLNSRDPKQLPWREYDIDIVVEATGKFNAKDKAMGHIEAGAKKVILTAPGKNEDVTIVMGVNEDQFDAERHVIISNASCTTNCLAPVVKVLDEEFGIESGLMTTVHAYTNDQKNIDNPHKDLRRARACGESIIPTTTGAAKALSLVLPHLKGKLHGLALRVPVPNVSLVDLVVDLKTDVTAEEVNEAFKRAAKTSMYGVLDYSDEPLVSTDY 285          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.153e-42
Identity = 92/213 (43.19%), Postives = 123/213 (57.75%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESAD-NELKGILSVCDEPLVSVDF 638
            V + R+P NLP   LG+D+V+E TG+F + E A  H+ AGAKKVLI+AP KGD+  T V GVN      D+ I+SNASCTTNCLAP + VL QK GI++G MTT HS+T DQ                  +++PTST                 +GI++RVPTP+           + T AEE+N+  + +AD  ++ G+L   DEPLVS DF
Sbjct:   76 VTAERDPANLPHKKLGVDIVMECTGIFTNTEKASAHLTAGAKKVLISAPAKGDVDRTVVYGVNHKDLTADDKIVSNASCTTNCLAPVLHVLQQKIGIVRGLMTTVHSFTNDQRILDQIHSDLRRARTASASMIPTSTGAARAVALVIPELKGKLDGISIRVPTPDVSLVDFTFVPQRDTTAEEINSVLKAAADTGDMTGVLGYTDEPLVSRDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.958e-41
Identity = 89/208 (42.79%), Postives = 117/208 (56.25%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            RNP  +PWG++G + V+E TGVF D+E A  H++AGAKKV+I+AP K D P +VVGVN   YK D  I+SNASCTTNCLAP  KV++ KFGI++G MTT HS T  Q                   NI+P+ST                  G+A RVPTP+           K    +E+ AA +  ++  LKGIL   ++ +VS DF
Sbjct:   85 RNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSK-DAPMFVVGVNEHQYKSDVNIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRGAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKSATYDEIKAAIKAESEGNLKGILGYTEDAVVSTDF 291          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.557e-41
Identity = 95/214 (44.39%), Postives = 119/214 (55.61%), Query Frame = 3
Query:   12 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKG--DIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 641
            S RNP  LPWGDLG D V+E TG+F     A  H++AGAK+V+I+AP K    IPT+VVGVN   Y  D + I+SNASCTTNCLAP  K+LD  FGI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPTPN           K T  EE+ AA + +A+ ELKGIL    + +VS+DFR
Sbjct:   75 SQRNPAQLPWGDLGADYVVESTGLFTTYATAENHLKAGAKRVIISAPSKDPEKIPTFVVGVNHLNYNADTDKIVSNASCTTNCLAPIAKILDDNFGIVEGLMTTVHAMTATQPTVDGPSKKDFRGGRGAAQNIIPSSTGAAKAAALVLPQLKGKLTGMAFRVPTPNVSVVDLTFKTEKATSYEEICAAMKTAAEGELKGILGYTADDVVSMDFR 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.340e-41
Identity = 89/212 (41.98%), Postives = 118/212 (55.66%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V  NRNP  +PWG  G D V+E TGVF D++ A  H++ GAKKV+I+AP K D P +VVGVN   YKP+  I+SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q                   NI+P+ST                  G++ RVPT +           K    E+V AA +E ++ +LKGIL   ++ +VS DF
Sbjct:   78 VFGNRNPEEIPWGGTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRIEKPATYEQVKAAIKEESEGKLKGILGYTEDDVVSTDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.362e-41
Identity = 92/213 (43.19%), Postives = 119/213 (55.87%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDF 638
            V   R+P N+PWG  G D V+E TGVF  +E A  H++ GAKKV+I+AP  GD P +VVGVN DAYKPD  +ISNASCTTNCLAP  KV++ K+GII+G MTT HS T  Q                   NI+P+ST                  G++LRVPT +                E++ A  + ++++ ELKGIL   DE +VS DF
Sbjct:   75 VFGERDPSNIPWGKAGADYVVESTGVFTGKEAASAHLKGGAKKVIISAPS-GDAPMFVVGVNLDAYKPDMTVISNASCTTNCLAPLAKVVNDKYGIIEGLMTTVHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVIPELNGKLTGMSLRVPTVDVSVVDLTVRIKNGASYEDIKATMKAASESPELKGILGYTDEDVVSTDF 286          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.697e-41
Identity = 87/212 (41.04%), Postives = 122/212 (57.55%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V + ++P  LPWG LG+D+ I+ TG+F + + A KHI+AGAKKV+ITAP  G  P YV+GVN + Y PD+ I+SNASCTTNCLAP  KV+  +FGI +G MTT HS T  Q                   NI+P+ST                  G+A RVPT +          +K+T  +E+ AA +++++  +KGIL   ++ +VS DF
Sbjct:   74 VFNEKDPAALPWGKLGVDVAIDSTGIFKEMDSANKHIEAGAKKVVITAPS-GSAPMYVMGVNEETYTPDQKIVSNASCTTNCLAPLAKVIHNEFGIKEGLMTTVHSMTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPSLQGKLTGMAFRVPTVDVSVVDLTVNLAKETSYDEIKAALKKASEGSMKGILGYTEDDVVSSDF 284          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.441e-41
Identity = 92/212 (43.40%), Postives = 117/212 (55.19%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V   R+PVN+PWG  G+D VIE TGVF   EGA KHI AGAKKV+ITAP K D P +VVGVN + Y  D  I+SNASCTTNCLAP  KV++  FGI  G MTT HS T  Q                   NI+P+ST                  G+A RVPT +           K+T  EE+ +  + +++ +LKG+L   ++ +VS DF
Sbjct:   75 VFQERDPVNIPWGKAGVDYVIESTGVFTTLEGAQKHIDAGAKKVVITAPSK-DAPMFVVGVNEEKYTSDLNIVSNASCTTNCLAPLAKVVNDTFGIESGLMTTVHSMTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVIPELNGKLTGLAFRVPTVDVSVVDLTVNLKKETTYEEIKSVIKAASEGKLKGVLGYTEDAVVSSDF 285          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 7.441e-41
Identity = 87/212 (41.04%), Postives = 124/212 (58.49%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V S R+P NL W ++G+++V+E TG+F+ +E A KHI+AGA++V++T P K D P +V+GVN   YK  +PIISNASCTTNCLAP  KV+++K+GI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPTPN           K    +++ AA + +A+ E+KGIL   D+ +VS DF
Sbjct:   73 VTSERDPANLKWDEIGVEVVVESTGLFLTQETAHKHIEAGARRVVMTGPPKDDTPMFVMGVNHTTYK-GQPIISNASCTTNCLAPLAKVVNEKYGIVEGLMTTVHATTATQKTVDGPSLKDWRGGRGASQNIIPSSTGAPKAVGKVYPALDGKLTGMAFRVPTPNVSVVDLTVRLEKPATYKDICAAIKAAAEGEMKGILGYTDDEVVSSDF 283          
The following BLAST results are available for this feature:
BLAST of CX295716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_CHLPN2.313e-4244.81Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P2_BACSU2.313e-4243.40Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]
G3P_ZYMMO5.153e-4243.19Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]
G3PC_PINSY1.958e-4142.79Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_SYNY32.557e-4144.39Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3PC_DIACA3.340e-4141.98Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_YARLI4.362e-4143.19Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_ZYGRO5.697e-4141.04Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P_PICPA7.441e-4143.40Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3PC_LEIME7.441e-4141.04Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC05075B06SK DroRLeaf1 Citrus clementina cDNA clone C05075B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295716 ID=CX295716; Name=CX295716; organism=Citrus clementina; type=EST; length=685bp
GAGGGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTG
GGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGG
TGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCC
CCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCT
TACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTG
CCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGG
GAACCATGACCACCACACACTCGTACACTGGCGACCAAAGGCTACTCGAT
GCTAGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGT
CCCAACATCAACTGGTGCGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCAC
TCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTC
TCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGA
GGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCC
TCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGAT
GTATCCTCAACCGTTGATTCATCTCTCACACTTGT
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