CX295716

Overview
NameCX295716
Unique NameCX295716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:530..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_AERS4 (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=epd PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.117e-31
Identity = 79/210 (37.62%), Postives = 104/210 (49.52%), Query Frame = 3
Query:   12 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            + ++P NLPW  LG+D+V++ TGVF  R  A  H+ AGA KVL + P   D+  T V GVN       E I+SNASCTTNC+ P ++ L ++F I  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N           KK    +VN A + ++   L GIL   +EPLVSVDF
Sbjct:   78 AEQDPANLPWRALGVDVVLDCTGVFGSRADAELHLGAGAGKVLFSHPADADVDATIVYGVNHQVLTGRERIVSNASCTTNCVVPVIETLHREFEINCGTITTIHSAMHDQQVIDAYHSDLRRTRAASQSIIPVDTKLAKGLERILPHFAGKFEAIAVRVPTINVTAMDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDF 287          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_SHELP (D-erythrose-4-phosphate dehydrogenase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=epd PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.191e-30
Identity = 72/203 (35.47%), Postives = 100/203 (49.26%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW  L ID+V E TG  +DR+    HI+AGAK+VLI+ P  GD+  T V GVN    K +  ++SNASCTTNCL P ++VLD+ F +  G +TT HS   DQ                  +I+P  T                   I++RVPT N           K+   + VN    ++A+   +G++   + PLVS DF
Sbjct:   85 LPWRSLDIDIVFEATGALIDRQACEAHIRAGAKQVLISHPSSGDVDATIVYGVNHQDLKAEHKVVSNASCTTNCLVPIIQVLDRAFKVRSGAITTIHSAMNDQQVIDAYHDDLRRTRAAGQSIIPVDTKLARGIERILPEMKDKFEAISVRVPTINVTAIDLSVTLDKRVDIDTVNQVLSQAANGSYQGVVGYTNAPLVSCDF 287          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_AERHH (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=epd PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.191e-30
Identity = 79/210 (37.62%), Postives = 104/210 (49.52%), Query Frame = 3
Query:   12 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            + R+P  LPW  LG+D+V++ TGVF  R  A  H+ AGA KVL + P + D+  T V GVN       E I+SNASCTTNC+ P ++ L ++F I  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N           KK    +VN A + ++   L GIL   +EPLVSVDF
Sbjct:   78 AERDPSRLPWRALGVDVVLDCTGVFGSRADAELHLAAGAGKVLFSHPAEADVDATIVYGVNHQVLTGRERIVSNASCTTNCVVPVIETLHREFEINCGTITTIHSAMHDQQVIDAYHSDLRRTRAASQSIIPVDTKLAKGLERILPHFAGKFEAIAVRVPTINVTAMDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDF 287          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_PLESA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pleurotus sajor-caju GN=GPD PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.555e-30
Identity = 74/212 (34.91%), Postives = 109/212 (51.42%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            + + ++P N+PWG +G D V+E TGVF   + A  H++ G +KV+I+AP   D P +V GVN + Y P   +ISNAS TTNCL P  KV+  KFGI++G ++T H+ T  Q                   NI+P+ST                  G++ RVPT +           K    +E+ AA +E+++   KGIL    + +VS DF
Sbjct:   74 IFAEKDPANIPWGSVGADYVVESTGVFTTIDKASAHLKGG-EKVVISAPS-ADAPMFVCGVNLETYDPKYKVISNASSTTNCLTPLAKVIHDKFGIVEGLISTIHATTATQKTVDGPSHKDWRGGRSVNNNIIPSSTGAANWVGKVIPSLNGKLTGLSFRVPTLDVSVVDLVVRLEKPADYKEIVAAIKEASETTHKGILGFTSDSVVSTDF 283          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.031e-30
Identity = 75/207 (36.23%), Postives = 103/207 (49.76%), Query Frame = 3
Query:   24 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            P  +PWG  G D V+E TGVF+  + A  HIQ GAK+V+++AP   D P +V+GVN D + P    I+SNASCTTNCLAP  KV+   FGI +  MTT H+YT  Q                   NI+P ST                  G+A RVP  +          S+     E+  A +++A+  +KG +   +  +VS DF
Sbjct:   81 PHEIPWGKAGADYVVESTGVFLSIDKASSHIQGGAKRVVVSAPSP-DAPMFVMGVNEDKFDPSSMTIVSNASCTTNCLAPLAKVIHDNFGIEEALMTTVHAYTATQKTVDGPSAKAWRDGRGAHQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVADVSVVELTCRLSRPGSYAEIKGAVKKAAEGPMKGYVGYTEYSVVSSDF 286          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_VIBVY (D-erythrose-4-phosphate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=epd PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.031e-30
Identity = 73/203 (35.96%), Postives = 102/203 (50.25%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW DL +DLV++ TGVF  +    +HI+AGAKKVL + PG  D+  T + GVN +  K +  ++SN SCTTNC+ P +KVLD+ FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      +VN     ++   L+GI+   + PLVS+DF
Sbjct:   95 LPWRDLEVDLVLDCTGVFGCQADGLEHIKAGAKKVLFSHPGASDLDNTIIYGVNHETLKAEHNVVSNGSCTTNCIVPIIKVLDEAFGIESGTITTIHSSMNDQQVIDAYHSDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTNVKVNDVNQTIVNASQCTLRGIVDYTEAPLVSIDF 297          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_VIBVU (D-erythrose-4-phosphate dehydrogenase OS=Vibrio vulnificus GN=epd PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.031e-30
Identity = 73/203 (35.96%), Postives = 102/203 (50.25%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW DL +DLV++ TGVF  +    +HI+AGAKKVL + PG  D+  T + GVN +  K +  ++SN SCTTNC+ P +KVLD+ FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      +VN     ++   L+GI+   + PLVS+DF
Sbjct:   95 LPWRDLEVDLVLDCTGVFGCQADGLEHIKAGAKKVLFSHPGASDLDNTIIYGVNHETLKAEHNVVSNGSCTTNCIVPIIKVLDEAFGIESGTITTIHSSMNDQQVIDAYHSDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTNVKVNDVNQTIVNASQCTLRGIVDYTEAPLVSIDF 297          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_VIBCH (D-erythrose-4-phosphate dehydrogenase OS=Vibrio cholerae GN=epd PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 73/203 (35.96%), Postives = 99/203 (48.77%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW DLG+DLV++ TGV+  +E   +HI AGAK VL + PG  D+  T + GVN +    +  I+SN SCTTNC+ P +KVLD  FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N                 +VN     ++   L+GI+   + PLVS+DF
Sbjct:   90 LPWRDLGVDLVLDCTGVYGCQEDGQQHIDAGAKLVLFSHPGASDLDNTIIYGVNHETLTAEHKIVSNGSCTTNCIVPIIKVLDDAFGIDSGTITTIHSSMNDQQVIDAYHNDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTIKSNVKVNDVNQTIVNASQCTLRGIVDYTEAPLVSIDF 292          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_VIBC3 (D-erythrose-4-phosphate dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=epd PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 73/203 (35.96%), Postives = 99/203 (48.77%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW DLG+DLV++ TGV+  +E   +HI AGAK VL + PG  D+  T + GVN +    +  I+SN SCTTNC+ P +KVLD  FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N                 +VN     ++   L+GI+   + PLVS+DF
Sbjct:   90 LPWRDLGVDLVLDCTGVYGCQEDGQQHIDAGAKLVLFSHPGASDLDNTIIYGVNHETLTAEHKIVSNGSCTTNCIVPIIKVLDDAFGIDSGTITTIHSSMNDQQVIDAYHNDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTIKSNVKVNDVNQTIVNASQCTLRGIVDYTEAPLVSIDF 292          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_SHEDO (D-erythrose-4-phosphate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=epd PE=3 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.525e-30
Identity = 72/203 (35.47%), Postives = 98/203 (48.28%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPWG+L ID+V E +G  ++RE    HI +GAK+VLI+ P   D+  T V GVN      +  ++SNASCTTNC+ P + VLD  FG+I G +TT HS   DQ                  +I+P  T                   I++RVPT N            +     +N+  +++A     GIL   DEPLVS DF
Sbjct:   85 LPWGELDIDIVFEASGSLIEREACEAHIISGAKQVLISHPSSQDVDATIVYGVNHHLLAAEHTVVSNASCTTNCIVPVIDVLDSHFGVISGAITTIHSAMNDQQVIDAYHDDLRRTRAAGQSIIPVDTKLARGIERILPKMKDKFEAISVRVPTINVTAIDVSVTLRDRVDISIINSVLQQAAKGRFDGILGYTDEPLVSCDF 287          
The following BLAST results are available for this feature:
BLAST of CX295716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
E4PD_AERS49.117e-3137.62D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
E4PD_SHELP1.191e-3035.47D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_AERHH1.191e-3037.62D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
G3P_PLESA1.555e-3034.91Glyceraldehyde-3-phosphate dehydrogenase OS=Pleuro... [more]
G3P_ONCMY2.031e-3036.23Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]
E4PD_VIBVY2.031e-3035.96D-erythrose-4-phosphate dehydrogenase OS=Vibrio vu... [more]
E4PD_VIBVU2.031e-3035.96D-erythrose-4-phosphate dehydrogenase OS=Vibrio vu... [more]
E4PD_VIBCH2.653e-3035.96D-erythrose-4-phosphate dehydrogenase OS=Vibrio ch... [more]
E4PD_VIBC32.653e-3035.96D-erythrose-4-phosphate dehydrogenase OS=Vibrio ch... [more]
E4PD_SHEDO4.525e-3035.47D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionC05075B06SK DroRLeaf1 Citrus clementina cDNA clone C05075B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295716 ID=CX295716; Name=CX295716; organism=Citrus clementina; type=EST; length=685bp
GAGGGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTG
GGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGG
TGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCC
CCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCT
TACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTG
CCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGG
GAACCATGACCACCACACACTCGTACACTGGCGACCAAAGGCTACTCGAT
GCTAGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGT
CCCAACATCAACTGGTGCGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCAC
TCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTC
TCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGA
GGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCC
TCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGAT
GTATCCTCAACCGTTGATTCATCTCTCACACTTGT
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