CX295716

Overview
NameCX295716
Unique NameCX295716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_VIBHB (D-erythrose-4-phosphate dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=epd PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.718e-30
Identity = 71/203 (34.98%), Postives = 100/203 (49.26%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW DL +D+V++ TGVF  +     HI+AGA+KVL + PG  D+  T + GVN +  K +  ++SN SCTTNC+ P +KVLD+ FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          S      +VN     ++   L+ I+   + PLVS+DF
Sbjct:   90 LPWRDLEVDIVLDCTGVFGSQADGQAHIEAGAQKVLFSHPGASDLDNTIIYGVNHETLKDEHRVVSNGSCTTNCIVPIIKVLDEAFGIESGTITTIHSSMNDQQVIDAYHNDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTISTNVKVNDVNQTIVNASQCTLRDIVDYTESPLVSIDF 292          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_VIBPA (D-erythrose-4-phosphate dehydrogenase OS=Vibrio parahaemolyticus GN=epd PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.316e-29
Identity = 70/203 (34.48%), Postives = 100/203 (49.26%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW DL +D+V++ TGV+  +     HI+AGAKKVL + PG  D+  T + GVN +  K +  ++SN SCTTNC+ P +KVLD+ FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      +VN     ++   L+ I+   + PLVS+DF
Sbjct:   90 LPWRDLEVDIVLDCTGVYGSKADGLAHIEAGAKKVLFSHPGANDLDNTIIYGVNHETLKDEHRVVSNGSCTTNCIVPIIKVLDEAFGIESGTITTIHSSMNDQQVIDAYHNDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTNVKVNDVNQTIVNASQCTLRNIVDYTESPLVSIDF 292          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_PSEA6 (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=epd PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29
Identity = 74/212 (34.91%), Postives = 104/212 (49.06%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            ++   N  +LPW  L ID+V+E TGV  +R    +HI  GAKKVL + P   D+  T ++G+N ++ K  + I+S  SCTTNC+ P ++VLD+ F +  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N            K   ++VN A +   +  L GIL   +EPLVSVDF
Sbjct:   76 LLQQENIRDLPWAQLDIDVVLECTGVNNERVHGEQHIAQGAKKVLFSQPCGPDVDATIIMGINEESLKASDSIVSAGSCTTNCIVPVIQVLDEAFSVSSGTITTIHSSMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLARGIERVLPKFAGKFEAIAVRVPTINVSAMDLSVTLDAKVTIDDVNQALKTVKNGRLNGILDFTEEPLVSVDF 287          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_PHOPR (D-erythrose-4-phosphate dehydrogenase OS=Photobacterium profundum GN=epd PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29
Identity = 73/203 (35.96%), Postives = 98/203 (48.28%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW DL +D+V++ TGV+  RE    HI+AGAKKVL + P   DI  T + GVN      +  I+SN SCTTNC+ P +K++D  FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N                 +VN A  E +   L+GI+   + PLVS+DF
Sbjct:   91 LPWHDLDVDIVLDCTGVYGSREDGLAHIKAGAKKVLFSHPAANDIDNTIIYGVNHKTLTSEHRIVSNGSCTTNCIVPVIKIIDDAFGIESGTITTIHSAMNDQQVIDGYHSDLRRTRAASQSIIPVDTKLHLGIGRIFPKFVDKFEAISVRVPTINVTAMDLSVTVKTNVKVNDVNQALSEVSRCTLEGIVDYTEAPLVSIDF 293          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_MELGA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Meleagris gallopavo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29
Identity = 72/195 (36.92%), Postives = 97/195 (49.74%), Query Frame = 3
Query:   57 DLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            + V+E TGVF   E AG H++ GAK+V+I+AP   D P +V+GVN + Y     I+SNA CTTNCLAP  KV+   FGI++G MTT H+ T  Q                   NI+P ST                  G+A  VPTPN           K    +++    + +AD  LKGIL   ++ +VS DF
Sbjct:    2 EYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS-ADAPMFVMGVNHEKYDKSLKIVSNALCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPFGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFHVPTPNVSVVDLTCRLEKPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDF 195          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_YERE8 (D-erythrose-4-phosphate dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=epd PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 73/203 (35.96%), Postives = 100/203 (49.26%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPWG+LGID+V++ +GV+  R     H+ +GAKKVL   PG  D+  T V GVN    + D  I+SNASCTTNC+ P +++LD  FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      EVN   +++A    +GI+   + PLVS DF
Sbjct:   86 LPWGELGIDVVLDCSGVYGSRADGEAHLTSGAKKVLFAHPGGHDLDATVVYGVNHQDLQADHRIVSNASCTTNCIIPIIQLLDVAFGIESGTVTTIHSSMNDQPVIDAYHQDLRRTRAASQSIIPVDTKLAAGITRIFPKFCDRFEAISVRVPTINVTAIDLSVSVTSPVDVAEVNQLLQKAARGSFRGIVDYTELPLVSTDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_ENTS8 (D-erythrose-4-phosphate dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=epd PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.830e-29
Identity = 73/203 (35.96%), Postives = 100/203 (49.26%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW  L +D+V++ TGV+  R     H++AGA+KVL + PG  D+  T V GVN +  + +  I+SNASCTTNC+ P +K++D  FGI  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS DF
Sbjct:   86 LPWKALDVDVVLDCTGVYGSRADGIAHLEAGARKVLFSHPGGNDLDATVVYGVNEEELRAEHRIVSNASCTTNCIIPIIKLMDDAFGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTRLAAGITRIFPKFHDRFEAIAVRVPTINVTAIDLSVTVQKPVKAYEVNLLLQKAAQGAFHGIVDYTELPLVSTDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_PROMH (D-erythrose-4-phosphate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=epd PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.003e-29
Identity = 73/204 (35.78%), Postives = 99/204 (48.53%), Query Frame = 3
Query:   30 NLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            +LPWG+LGID+V++ +GV+  R     HI  GAKKVL + PG  D+  T V GVN    K    I+SNASCTTNC+ P +K++D  FGI  GT+TT H+   DQ                  +I+P  T                   I++RVPT N                 +VN   ++SA    +GI+   + PLVS DF
Sbjct:   85 DLPWGELGIDVVLDCSGVYGSRADGEAHIAQGAKKVLFSHPGTIDLDATVVFGVNQHELKKQHRIVSNASCTTNCIIPIIKMMDDAFGIESGTVTTIHAAMNDQPVIDAYHKDLRRTRAAGQSIIPVDTKLAAGITRIFPKFKDHFEAISVRVPTINVTAIDLSVTVKNAVNVLDVNKLIQKSATGAFRGIVDYTELPLVSTDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_ERWT9 (D-erythrose-4-phosphate dehydrogenase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=epd PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.114e-28
Identity = 72/204 (35.29%), Postives = 100/204 (49.02%), Query Frame = 3
Query:   30 NLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            +LPW +L +D+V++ TGV+  R     H++AGA+KVL + PG  D+  T V GVN     P+  ++SNASCTTNC+ P +K+LD  +GI  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N               A EVNA    ++     GI+   + PLVS+DF
Sbjct:   85 SLPWRELNVDIVLDCTGVYGSRADGEAHLKAGARKVLFSHPGGHDLDATVVYGVNEKELLPEHLLVSNASCTTNCIIPIIKLLDDAWGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTRLAAGITRIFPKFNDRFEAIAVRVPTINVTAIDLSVSVRDAVKASEVNALLHSASLGAFSGIVDYTELPLVSIDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_LACLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactococcus lactis subsp. lactis GN=gap PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 74/195 (37.95%), Postives = 93/195 (47.69%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQ-AGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESAD 581
            V + RNP ++ W D G+++V+E TG F  +E A KH+   GAKKVLITAPG  D+ T V   N       E +IS  SCTTN LAP    L++ FG+  GTMTT HSYTGDQ                    NIVP S+                  G A RV TP            K    +E+N A + +AD
Sbjct:   74 VTAERNPEDIQWADSGVEIVLEATGFFATKEKAEKHLHPGGAKKVLITAPGGNDVKTVVFNTNHTILDGTETVISAGSCTTNSLAPMADALNKNFGVKGGTMTTVHSYTGDQMTLDGPHRGGDFRRARAAAENIVPASSGAAKAIGLVLPELSGLMKGHAQRVSTPTGSITELVTVLEKHVTVDEINEAMKAAAD 268          
The following BLAST results are available for this feature:
BLAST of CX295716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
E4PD_VIBHB7.718e-3034.98D-erythrose-4-phosphate dehydrogenase OS=Vibrio ha... [more]
E4PD_VIBPA1.316e-2934.48D-erythrose-4-phosphate dehydrogenase OS=Vibrio pa... [more]
E4PD_PSEA61.719e-2934.91D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]
E4PD_PHOPR1.719e-2935.96D-erythrose-4-phosphate dehydrogenase OS=Photobact... [more]
G3P_MELGA2.246e-2936.92Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
E4PD_YERE82.933e-2935.96D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_ENTS83.830e-2935.96D-erythrose-4-phosphate dehydrogenase OS=Enterobac... [more]
E4PD_PROMH5.003e-2935.78D-erythrose-4-phosphate dehydrogenase OS=Proteus m... [more]
E4PD_ERWT91.114e-2835.29D-erythrose-4-phosphate dehydrogenase OS=Erwinia t... [more]
G3P_LACLA1.901e-2837.95Glyceraldehyde-3-phosphate dehydrogenase OS=Lactoc... [more]

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Properties
Property NameValue
Genbank descriptionC05075B06SK DroRLeaf1 Citrus clementina cDNA clone C05075B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295716 ID=CX295716; Name=CX295716; organism=Citrus clementina; type=EST; length=685bp
GAGGGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTG
GGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGG
TGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCC
CCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCT
TACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTG
CCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGG
GAACCATGACCACCACACACTCGTACACTGGCGACCAAAGGCTACTCGAT
GCTAGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGT
CCCAACATCAACTGGTGCGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCAC
TCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTC
TCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGA
GGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCC
TCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGAT
GTATCCTCAACCGTTGATTCATCTCTCACACTTGT
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