CX295716

Overview
NameCX295716
Unique NameCX295716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:530..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_YERPS (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pseudotuberculosis GN=epd PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 71/203 (34.98%), Postives = 101/203 (49.75%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW +LGID+V++ +GV+  RE    H+ +GAKKVL   PG  D+  T V GVN    + +  I+SNASCTTNC+ P +++LD  +GI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      EVN   +++A    +GI+   + PLVS+DF
Sbjct:   86 LPWSELGIDVVLDCSGVYGSREDGEAHVASGAKKVLFAHPGGHDLDATVVYGVNHQDLRAEHRIVSNASCTTNCIIPIIQLLDIAYGIESGTVTTIHSSMNDQPVIDAYHQDLRRTRAASQSIIPVDTKLAAGITRIFPKFCDRFEAISVRVPTINVTAIDLSVSVTHPVGVAEVNQLLQKAARGAFRGIVDYTELPLVSMDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_YERPN (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=epd PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 71/203 (34.98%), Postives = 101/203 (49.75%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW +LGID+V++ +GV+  RE    H+ +GAKKVL   PG  D+  T V GVN    + +  I+SNASCTTNC+ P +++LD  +GI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      EVN   +++A    +GI+   + PLVS+DF
Sbjct:   86 LPWSELGIDVVLDCSGVYGSREDGEAHVASGAKKVLFAHPGGHDLDATVVYGVNHQDLRAEHRIVSNASCTTNCIIPIIQLLDIAYGIESGTVTTIHSSMNDQPVIDAYHQDLRRTRAASQSIIPVDTKLAAGITRIFPKFCDRFEAISVRVPTINVTAIDLSVSVTHPVGVAEVNQLLQKAARGAFRGIVDYTELPLVSMDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_YERPE (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pestis GN=epd PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 71/203 (34.98%), Postives = 101/203 (49.75%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW +LGID+V++ +GV+  RE    H+ +GAKKVL   PG  D+  T V GVN    + +  I+SNASCTTNC+ P +++LD  +GI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      EVN   +++A    +GI+   + PLVS+DF
Sbjct:   86 LPWSELGIDVVLDCSGVYGSREDGEAHVASGAKKVLFAHPGGHDLDATVVYGVNHQDLRAEHRIVSNASCTTNCIIPIIQLLDIAYGIESGTVTTIHSSMNDQPVIDAYHQDLRRTRAASQSIIPVDTKLAAGITRIFPKFCDRFEAISVRVPTINVTAIDLSVSVTHPVGVAEVNQLLQKAARGAFRGIVDYTELPLVSMDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_YERPA (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=epd PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 71/203 (34.98%), Postives = 101/203 (49.75%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW +LGID+V++ +GV+  RE    H+ +GAKKVL   PG  D+  T V GVN    + +  I+SNASCTTNC+ P +++LD  +GI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      EVN   +++A    +GI+   + PLVS+DF
Sbjct:   86 LPWSELGIDVVLDCSGVYGSREDGEAHVASGAKKVLFAHPGGHDLDATVVYGVNHQDLRAEHRIVSNASCTTNCIIPIIQLLDIAYGIESGTVTTIHSSMNDQPVIDAYHQDLRRTRAASQSIIPVDTKLAAGITRIFPKFCDRFEAISVRVPTINVTAIDLSVSVTHPVGVAEVNQLLQKAARGAFRGIVDYTELPLVSMDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_VIBF1 (D-erythrose-4-phosphate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=epd PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 70/203 (34.48%), Postives = 96/203 (47.29%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW  L +DLV++ TGV+  +    KHI AGAKKVL + PG  D+  T + GVN D   P+  I+SN SCTTNC+ P +K +D  FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      ++N     ++   L  I+   + PLVS+DF
Sbjct:   90 LPWQSLEVDLVLDCTGVYGSKSDGEKHITAGAKKVLFSHPGGSDLDNTIIYGVNHDTLLPEHRIVSNGSCTTNCIIPVIKAIDDAFGIDSGTITTIHSSMNDQQVIDAYHSDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTNVKVNDINQTIVNASRCTLHNIVDYTEAPLVSIDF 292          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_ALISL (D-erythrose-4-phosphate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=epd PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.901e-28
Identity = 68/203 (33.50%), Postives = 96/203 (47.29%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW  L +DLV++ TGV+  +    +HI AGAKKVL + PG  D+  T + GVN D   P+  ++SN SCTTNC+ P +K +D  FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      ++N     ++   L  I+   + PLVS+DF
Sbjct:   90 LPWQSLQVDLVLDCTGVYGSKADGERHIDAGAKKVLFSHPGSADLDNTIIYGVNHDTLLPEHRVVSNGSCTTNCIIPVIKAIDDAFGIESGTITTIHSAMNDQPVIDAYHTDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTNVKVNDINQTIVNASQCTLHNIVDYTEAPLVSIDF 292          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_STREQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus equisimilis GN=gap PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.483e-28
Identity = 76/213 (35.68%), Postives = 101/213 (47.42%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQA-GAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            V + R+P N+ W   G+++V+E TG F  +E A K + A GAKKV+ITAPG  D+      +        E +IS ASCTTNCLAP  K L   FGI KG MTT H+YTGDQ                    NIVP ST                 +G A RVP P            K    +E+NAA + ++++         ++P+VS D
Sbjct:   74 VSAERDPENIDWATDGVEIVLEATGFFAKKEAAEKPLHANGAKKVVITAPGGNDVKQLFSTLTTSILDGTETVISGASCTTNCLAPMAKALHDAFGIQKGLMTTIHAYTGDQMIVDGHRGGGDLRRARAGAANIVPNSTGARKAIGLVIPELNGKLDGAAQRVPVPTGSVTELVVTLDKNVSVDEINAAMKAASNDS----FGYTEDPIVSSD 282          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_VIBFM (D-erythrose-4-phosphate dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=epd PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.483e-28
Identity = 69/203 (33.99%), Postives = 96/203 (47.29%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW  L +DL+++ TGV+  +    KHI AGAKKVL + PG  D+  T + GVN D   P+  I+SN SCTTNC+ P +K +D  FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      ++N     ++   L  I+   + PLVS+DF
Sbjct:   90 LPWQSLEVDLILDCTGVYGSKADGEKHINAGAKKVLFSHPGGSDLDNTIIYGVNHDTLLPEHRIVSNGSCTTNCIIPVIKAIDDAFGIDSGTITTIHSSMNDQQVIDAYHSDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTNVKVNDINQTIVNASRCTLHNIVDYTEAPLVSIDF 292          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_PSYIN (D-erythrose-4-phosphate dehydrogenase OS=Psychromonas ingrahamii (strain 37) GN=epd PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.483e-28
Identity = 72/204 (35.29%), Postives = 98/204 (48.04%), Query Frame = 3
Query:   30 NLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            +LPW +  ID+V++ TG++  R  A  HI AGAKKV+ + P   D+  T V G+N      DE  IS ASCTTNC+ P +  LD+ F I  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N          SK    +E+N    ++++  LK IL   + PLVS+DF
Sbjct:   85 DLPWHEHDIDIVLDCTGIYGSRADADAHIAAGAKKVIFSHPADPDVDATVVYGINHQQLTGDETFISGASCTTNCMVPVIDTLDKHFAIKCGTITTIHSAMNDQPVIDAYHSDLRRTRAASQSIIPVDTKLAAGIERILPKFANKFEAIAVRVPTINVTAMDLSITVSKDVTIQEINDCLLKASETNLKDILGYTEAPLVSIDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_IDILO (D-erythrose-4-phosphate dehydrogenase OS=Idiomarina loihiensis GN=epd PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.243e-28
Identity = 69/203 (33.99%), Postives = 96/203 (47.29%), Query Frame = 3
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            + W    +D V++ TGVF  +     ++Q G K+VL + PGK D+  T + GVN      D  ++SN SCTTNC+ P +KVLD  FGI  G +TT HS   DQ                  +I+P  T                   IA+RVPT N          +     E++N   RE ++ +L GIL   +EPLVS+DF
Sbjct:   88 IDWRAHEVDFVVDCTGVFGSQADGQLYLQQGVKRVLFSHPGKPDVDFTAIYGVNEKELTVDHKVVSNGSCTTNCIVPVIKVLDDAFGIDSGAITTIHSAMHDQQVIDAYHPDLRRTRAAGRSIIPVDTRLARGIERILPHLEGRFEAIAVRVPTTNVTAMDLSVTLNSDATIEQINQVLREQSERQLAGILDYTEEPLVSIDF 290          
The following BLAST results are available for this feature:
BLAST of CX295716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
E4PD_YERPS1.901e-2834.98D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_YERPN1.901e-2834.98D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_YERPE1.901e-2834.98D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_YERPA1.901e-2834.98D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_VIBF11.901e-2834.48D-erythrose-4-phosphate dehydrogenase OS=Vibrio fi... [more]
E4PD_ALISL1.901e-2833.50D-erythrose-4-phosphate dehydrogenase OS=Aliivibri... [more]
G3P_STREQ2.483e-2835.68Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
E4PD_VIBFM2.483e-2833.99D-erythrose-4-phosphate dehydrogenase OS=Vibrio fi... [more]
E4PD_PSYIN2.483e-2835.29D-erythrose-4-phosphate dehydrogenase OS=Psychromo... [more]
E4PD_IDILO3.243e-2833.99D-erythrose-4-phosphate dehydrogenase OS=Idiomarin... [more]

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Properties
Property NameValue
Genbank descriptionC05075B06SK DroRLeaf1 Citrus clementina cDNA clone C05075B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295716 ID=CX295716; Name=CX295716; organism=Citrus clementina; type=EST; length=685bp
GAGGGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTG
GGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGG
TGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCC
CCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCT
TACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTG
CCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGG
GAACCATGACCACCACACACTCGTACACTGGCGACCAAAGGCTACTCGAT
GCTAGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGT
CCCAACATCAACTGGTGCGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCAC
TCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTC
TCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGA
GGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCC
TCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGAT
GTATCCTCAACCGTTGATTCATCTCTCACACTTGT
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