CX295716

Overview
NameCX295716
Unique NameCX295716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:530..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MW2) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28
Identity = 78/204 (38.24%), Postives = 102/204 (50.00%), Query Frame = 3 
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            LPW DL ID+V+E TG + D++ A  HI+AGAKKVLI+AP  GD+ T V   N       E ++S ASCTTN LAP  KVL+  FG+++G MTT H+YTGDQ                    NI+P ST                 +G A RVP              K+    E+VN A + +A NE  G     ++ +VS D
Sbjct:   83 LPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMK-NASNESFG---YTEDEIVSSD 282
[Close]
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_STAAU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus GN=gapA1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28
Identity = 78/204 (38.24%), Postives = 102/204 (50.00%), Query Frame = 3 
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            LPW DL ID+V+E TG + D++ A  HI+AGAKKVLI+AP  GD+ T V   N       E ++S ASCTTN LAP  KVL+  FG+++G MTT H+YTGDQ                    NI+P ST                 +G A RVP              K+    E+VN A + +A NE  G     ++ +VS D
Sbjct:   83 LPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMK-NASNESFG---YTEDEIVSSD 282
[Close]
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MSSA476) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28
Identity = 78/204 (38.24%), Postives = 102/204 (50.00%), Query Frame = 3 
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            LPW DL ID+V+E TG + D++ A  HI+AGAKKVLI+AP  GD+ T V   N       E ++S ASCTTN LAP  KVL+  FG+++G MTT H+YTGDQ                    NI+P ST                 +G A RVP              K+    E+VN A + +A NE  G     ++ +VS D
Sbjct:   83 LPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMK-NASNESFG---YTEDEIVSSD 282
[Close]
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MRSA252) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28
Identity = 78/204 (38.24%), Postives = 102/204 (50.00%), Query Frame = 3 
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            LPW DL ID+V+E TG + D++ A  HI+AGAKKVLI+AP  GD+ T V   N       E ++S ASCTTN LAP  KVL+  FG+++G MTT H+YTGDQ                    NI+P ST                 +G A RVP              K+    E+VN A + +A NE  G     ++ +VS D
Sbjct:   83 LPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMK-NASNESFG---YTEDEIVSSD 282
[Close]
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain N315) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28
Identity = 78/204 (38.24%), Postives = 102/204 (50.00%), Query Frame = 3 
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            LPW DL ID+V+E TG + D++ A  HI+AGAKKVLI+AP  GD+ T V   N       E ++S ASCTTN LAP  KVL+  FG+++G MTT H+YTGDQ                    NI+P ST                 +G A RVP              K+    E+VN A + +A NE  G     ++ +VS D
Sbjct:   83 LPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMK-NASNESFG---YTEDEIVSSD 282
[Close]
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28
Identity = 78/204 (38.24%), Postives = 102/204 (50.00%), Query Frame = 3 
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            LPW DL ID+V+E TG + D++ A  HI+AGAKKVLI+AP  GD+ T V   N       E ++S ASCTTN LAP  KVL+  FG+++G MTT H+YTGDQ                    NI+P ST                 +G A RVP              K+    E+VN A + +A NE  G     ++ +VS D
Sbjct:   83 LPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMK-NASNESFG---YTEDEIVSSD 282
[Close]
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain COL) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28
Identity = 78/204 (38.24%), Postives = 102/204 (50.00%), Query Frame = 3 
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            LPW DL ID+V+E TG + D++ A  HI+AGAKKVLI+AP  GD+ T V   N       E ++S ASCTTN LAP  KVL+  FG+++G MTT H+YTGDQ                    NI+P ST                 +G A RVP              K+    E+VN A + +A NE  G     ++ +VS D
Sbjct:   83 LPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMK-NASNESFG---YTEDEIVSSD 282
[Close]
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_TOLAT (D-erythrose-4-phosphate dehydrogenase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=epd PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28
Identity = 66/203 (32.51%), Postives = 99/203 (48.77%), Query Frame = 3 
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPWGDLG+D+V++ +GV+  R     H+ +GAKKVL + PG  D+  T + GVN    + +  I+S+ SCTTNC+ P +K+LD  F I  GT+TT H+   DQ                  +I+P  T                   I++RVPT N          +      +VN   + +A  + + I+   + PLVS+DF
Sbjct:   86 LPWGDLGVDIVLDCSGVYGKRADGEMHLASGAKKVLFSHPGSSDLDATVIYGVNHQQLQSEHRIVSSGSCTTNCIIPIIKLLDDAFSIESGTVTTIHASMNDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPKFCDRFEAISVRVPTINVTAIDLSVTVTNAVSVLDVNTMLQRAAKGDFRSIVDYTELPLVSIDF 288
[Close]
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_PHOLL (D-erythrose-4-phosphate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=epd PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28
Identity = 68/203 (33.50%), Postives = 98/203 (48.28%), Query Frame = 3 
Query:   33 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            LPW +LGID+V++ +G++  R     H+ +GAKKVL   PG  D+  T V GVN      ++ I+SNASCTTNC+ P +K+LD +F I  GT+TT H+   DQ                  +I+P  T                   I++RVPT N                 ++N   ++SA    +GI+   + PLVS DF
Sbjct:   86 LPWQELGIDIVLDCSGIYGSRADGEAHLASGAKKVLFAHPGGNDLDATVVYGVNQHLLTAEDRIVSNASCTTNCIIPIIKLLDDQFEIESGTVTTIHASMNDQPVIDAYHKDLRRTRAASQSIIPVDTKLAAGITRIFPKFCDRFEAISVRVPTINVTAIDLSVTVKSSVTVNKINELMQKSAATSFRGIVDYTELPLVSTDF 288
[Close]
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_COLP3 (D-erythrose-4-phosphate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=epd PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 69/205 (33.66%), Postives = 100/205 (48.78%), Query Frame = 3 
Query:   30 NLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDF 638
            +LPW    ID+V++ TG + ++     HI  GAKKVL + PG  DI  T + G+N       + ++SN SCTTNC+ P +KV+D+ FG+  G++TT HS   DQ                  +I+P  T                   IA+RVPT N          +      ++N A + +  N +L G+LS  +EPLVSVDF
Sbjct:   85 SLPWQQQNIDIVLDCTGKYGNKADGLSHINRGAKKVLFSHPGSQDIDATIIYGINHQTLTSSDRVVSNGSCTTNCIVPVIKVIDEAFGVESGSITTIHSSMHDQQVIDAYHKDLRLSRAASQSIIPVDTKLAAGIERILPKFKGRFEAIAVRVPTINVTAMDLSLTVNNDVCICDINQAIQAATSNHDLYGVLSYTEEPLVSVDF 289
The following BLAST results are available for this feature:
BLAST of CX295716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P1_STAAW7.224e-2838.24Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAU7.224e-2838.24Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAS7.224e-2838.24Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAR7.224e-2838.24Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAN7.224e-2838.24Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAM7.224e-2838.24Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAC7.224e-2838.24Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
E4PD_TOLAT7.224e-2832.51D-erythrose-4-phosphate dehydrogenase OS=Tolumonas... [more]
E4PD_PHOLL7.224e-2833.50D-erythrose-4-phosphate dehydrogenase OS=Photorhab... [more]
E4PD_COLP32.745e-2733.66D-erythrose-4-phosphate dehydrogenase OS=Colwellia... [more]

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Properties
Property NameValue
Genbank descriptionC05075B06SK DroRLeaf1 Citrus clementina cDNA clone C05075B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295716 ID=CX295716; Name=CX295716; organism=Citrus clementina; type=EST; length=685bp
GAGGGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTG
GGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGG
TGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCC
CCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCT
TACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTG
CCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGG
GAACCATGACCACCACACACTCGTACACTGGCGACCAAAGGCTACTCGAT
GCTAGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGT
CCCAACATCAACTGGTGCGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCAC
TCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTC
TCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGA
GGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCC
TCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGAT
GTATCCTCAACCGTTGATTCATCTCTCACACTTGT
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