CX295716

Overview
NameCX295716
Unique NameCX295716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:530..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P3_ECOLI (Putative glyceraldehyde-3-phosphate dehydrogenase C OS=Escherichia coli (strain K12) GN=gapC PE=5 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.682e-27
Identity = 76/211 (36.02%), Postives = 99/211 (46.92%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            V + +   N+PW   G ++++E TG +   E +  H+ AGAKKVLI+AP  G++ T V  VN D    ++ I+S ASCTTNCLAP  K L   FGI  GTMTT H+YTG Q                   NI+P +T                  G A RVP              KK  AEEVN A +++  N         DE +VS D
Sbjct:   74 VYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPA-GEMKTIVYNVNDDTLDGNDTIVSVASCTTNCLAPMAKALHDSFGIEVGTMTTIHAYTGTQSLVDGPRGKDLRASRAAAENIIPHTTGAAKAIGLVIPELSGKLKGHAQRVPVKTGSVTELVSILGKKVTAEEVNNALKQATTNNES--FGYTDEEIVSSD 281          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P3_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase C OS=Escherichia coli O157:H7 GN=gapC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.987e-27
Identity = 76/211 (36.02%), Postives = 99/211 (46.92%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            V + +   N+PW   G ++++E TG +   E +  H+ AGAKKVLI+AP  G++ T V  VN D    ++ I+S ASCTTNCLAP  K L   FGI  GTMTT H+YTG Q                   NI+P +T                  G A RVP              KK  AEEVN A +++  N         DE +VS D
Sbjct:   74 VYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPA-GEMKTIVYKVNDDTLDGNDTIVSVASCTTNCLAPMAKALHDSFGIEVGTMTTIHAYTGTQSLVDGPRGKDLRASRAAAENIIPHTTGAAKAIGLVIPELSGKLKGHAQRVPVKTGSVTELVSILGKKVTAEEVNNALKQATTNNES--FGYTDEEIVSSD 281          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P3_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap3 PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.043e-26
Identity = 69/208 (33.17%), Postives = 107/208 (51.44%), Query Frame = 3
Query:   24 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFR 641
            P ++PW D G+DLV+E +G F        + + G +KV++ AP K +    V+GVN   Y+P++  +++ ASCTTNCLAP VKV+ +  GI  G +TT H  T  Q                  +++PT+T                 NGIA+RVP  N          ++ T  EE+NA  + +++   L+GIL   + PLVS+D++
Sbjct:   81 PEDVPWEDFGVDLVLECSGKFRTPATLDPYFKRGVQKVIVAAPVKEEALNIVMGVNDYLYEPEKHHLLTAASCTTNCLAPVVKVIHEGLGIKHGIITTIHDNTNTQTLVDAPHKDLRRARATSLSLIPTTTGSATAIALIYPELKGKLNGIAVRVPLLNASLTDCVFEVNRPTTVEEINALLKAASEQAPLQGILGYEERPLVSIDYK 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26
Identity = 69/208 (33.17%), Postives = 107/208 (51.44%), Query Frame = 3
Query:   24 PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFR 641
            P ++PW D G+DLV+E +G F        + + G +KV++ AP K +    V+GVN   Y+P++  +++ ASCTTNCLAP VKV+ +  GI  G +TT H  T  Q                  +++PT+T                 NGIA+RVP  N          ++ T  EE+NA  + +++   L+GIL   + PLVS+D++
Sbjct:   81 PDDVPWEDFGVDLVLECSGKFRTPATLDPYFKRGVQKVIVAAPVKEEALNIVMGVNDYLYEPEKHHLLTAASCTTNCLAPVVKVIHEGLGIKHGIITTIHDNTNTQTLVDAPHKDLRRARATSLSLIPTTTGSATAIALIYPELKGKLNGIAVRVPLLNASLTDCVFEVTRPTTVEEINALLKAASEQAPLQGILGYEERPLVSIDYK 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: E4PD_EDWI9 (D-erythrose-4-phosphate dehydrogenase OS=Edwardsiella ictaluri (strain 93-146) GN=epd PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 69/204 (33.82%), Postives = 96/204 (47.06%), Query Frame = 3
Query:   30 NLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            +LPW  L +D+V+E +GV+  R     H+ AGA KVL + PG  D+  T V GVN ++   +  I+SNASCTTNC+ P +K+LD  F I  G +TT HS   DQ                  +I+P  T                   I++RVPT N                E+VN   +++A     GI+   + PLVS DF
Sbjct:   85 DLPWEALQVDVVLECSGVYGSRADGEAHLLAGAGKVLFSHPGGHDLDATVVYGVNQESLLAEHRIVSNASCTTNCIIPVIKLLDDAFAIESGAVTTIHSSMNDQQVIDAYHPDLRRTRAASHSIIPVDTKLAAGIARVLPQFRDRFEAISVRVPTLNVTAIDLSVSVRTPVRVEQVNHLLQKAASTAFHGIVDYTELPLVSTDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_LACDE (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactobacillus delbrueckii subsp. bulgaricus GN=gap PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.275e-24
Identity = 68/184 (36.96%), Postives = 90/184 (48.91%), Query Frame = 3
Query:   30 NLPW-GDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRE 572
            N+PW  + G+D V+E TG +  +  +  H+ AGAK+VLI+AP   D+ T V  VN D    D+ I+S  SCTTN LAP    L+++FGI  GTMTT H+YT  Q                    NI+P ST                 +G A RVP  +           KK  AEEVNAA ++
Sbjct:   86 NIPWVKNDGVDFVLECTGFYTSKAKSQAHLDAGAKRVLISAPAGNDLKTIVYSVNQDTLTADDTIVSAGSCTTNSLAPMANALNKEFGIQVGTMTTIHAYTATQKVLDGPDRGNNFRNARAAAENIIPHSTGAAKAIGLVLPELNGKLDGHAQRVPVKDGSETELVTILDKKVTAEEVNAAMKK 269          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_HELPY (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori GN=gapA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 67/202 (33.17%), Postives = 102/202 (50.50%), Query Frame = 3
Query:   51 GIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI-----PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            G+D++IE +G F++ +    ++  GAKKVL++AP  G+      PT V GVN   Y+ ++ I+SNASCTTN +AP   +LD+ F I +G +TT HSYT DQ                   NI+PT+T                 +G ++RVP+ +           KK   + +N    E++   LKG+L +  +  VS DF
Sbjct:   85 GVDVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFCYQ-NQAIVSNASCTTNAIAPICAILDKAFKIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKAPKDPINDLLIEASKGVLKGVLEIDLKERVSSDF 285          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_HELPJ (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori J99 GN=gapA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 65/202 (32.18%), Postives = 100/202 (49.50%), Query Frame = 3
Query:   51 GIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI-----PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            G+ ++IE +G F++ +    ++  GAKKVL++AP  G+      PT V GVN   Y+ ++ I+SNASCTTN +AP   +LD+ F I +G +TT HSYT DQ                   NI+PT+T                 +G ++RVP+ +           KK   + +N     ++   LKG+L +  +  VS DF
Sbjct:   85 GVGVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFLYQ-NQAIVSNASCTTNAIAPICAILDKAFSIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKALKDPINDLLITASKGTLKGVLEIDLKERVSSDF 285          
The following BLAST results are available for this feature:
BLAST of CX295716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P3_ECOLI4.682e-2736.02Putative glyceraldehyde-3-phosphate dehydrogenase ... [more]
G3P3_ECO577.987e-2736.02Glyceraldehyde-3-phosphate dehydrogenase C OS=Esch... [more]
G3P3_ANAVT1.043e-2633.17Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P3_ANASP1.362e-2633.17Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
E4PD_EDWI91.153e-2533.82D-erythrose-4-phosphate dehydrogenase OS=Edwardsie... [more]
G3P_LACDE1.275e-2436.96Glyceraldehyde-3-phosphate dehydrogenase OS=Lactob... [more]
G3P_HELPY5.923e-2233.17Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
G3P_HELPJ3.839e-2132.18Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]

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Properties
Property NameValue
Genbank descriptionC05075B06SK DroRLeaf1 Citrus clementina cDNA clone C05075B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295716 ID=CX295716; Name=CX295716; organism=Citrus clementina; type=EST; length=685bp
GAGGGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTG
GGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGG
TGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCC
CCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCT
TACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTG
CCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGG
GAACCATGACCACCACACACTCGTACACTGGCGACCAAAGGCTACTCGAT
GCTAGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGT
CCCAACATCAACTGGTGCGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCAC
TCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTC
TCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGA
GGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCC
TCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGAT
GTATCCTCAACCGTTGATTCATCTCTCACACTTGT
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