CX295716

Overview
NameCX295716
Unique NameCX295716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:530..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.299e-40
Identity = 91/212 (42.92%), Postives = 118/212 (55.66%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V   R+PVN+PWG  G+D VI+ TGVF + + A KHI AGAKKV+ITAP     P +VVGVN D Y PD  IISNASCTTNCLAP  K+++ KFGI +G MTT HS T  Q                   NI+P+ST                  G++LRVPT +           K    +E+ AA +E+A+  LKG++   ++ +VS DF
Sbjct:   75 VYQERDPVNIPWGKDGVDYVIDSTGVFKELDSAQKHIDAGAKKVVITAPSS-TAPMFVVGVNEDKYTPDLNIISNASCTTNCLAPLAKIINNKFGIEEGLMTTVHSITATQKTVDGPSHKDWRSGPTASGNIIPSSTGAAKAVGKVIPELAGKLTGMSLRVPTVDVSVVDLTVKLLKDATYDEIKAAVKEAAEGPLKGVVGYTEDQVVSSDF 285          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 8.227e-40
Identity = 88/207 (42.51%), Postives = 118/207 (57.00%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            ++P  +PW + G+ +VIE TGVF D + A  H++ GAKKV+ITAP KG+  T V+GVN +AY P    IISNASCTTN LAP +KVL++ FG+ K  MTT HSYT DQ                  NI+PT+T                 +G+ALRVPT             ++  AEEVNAA + +A+  LKGIL+  ++ +V  D
Sbjct:   75 KDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQD 281          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.227e-40
Identity = 88/209 (42.11%), Postives = 115/209 (55.02%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 641
            RNP  +PWG +G + V+E TGVF D+E A  H++ GAKKV+I+AP K D P +VVGVN   YK D  I+SNASCTTNCLAP  KV++ KFGI++G MTT H+ T  Q                   NI+P+ST                  G++ RVPT +           K    +E+ AA +  A+  LKGIL   +E LVS DF+
Sbjct:   82 RNPEEIPWGSVGAEYVVESTGVFTDQEKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEKEYKSDINIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPVLNGKLTGMSFRVPTVDVSVVDLTVRLEKSATYDEIKAAVKAEAEGSLKGILGYVEEDLVSTDFQ 289          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.227e-40
Identity = 87/208 (41.83%), Postives = 115/208 (55.29%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            RNP  +PWG  G D V+E TGVF D++ A  H++ GAKKV+I+AP K D P +VVGVN   YK D  I+SNASCTTNCLAP  KV++ +FGI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPT +           K    E++ AA +E ++ +LKGIL   ++ LVS DF
Sbjct:   82 RNPEEIPWGQAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEHEYKSDLNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAMTATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTCDVSVVDLTVRIEKAASYEQIKAAIKEESEGKLKGILGYTEDDLVSTDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 8.227e-40
Identity = 90/215 (41.86%), Postives = 121/215 (56.28%), Query Frame = 3
Query:    9 VSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD--IPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFR 641
            VS RNP  LPWG LG D V+E TG+F D EGA KH+QAGA++V+I+AP K    + T +VGVN D + P +  I+SNASCTTNCLAP  KV++  FG+ +G MTT H+ T  Q                   NI+P+ST                  G+A RVPTP+          +K T  +E+ AA +++++  L GIL   DE +VS DF+
Sbjct:   76 VSVRNPAELPWGKLGADYVVESTGLFTDSEGASKHLQAGARRVIISAPTKDPDRVRTLLVGVNHDLFDPSKDLIVSNASCTTNCLAPIAKVINDNFGLTEGLMTTVHAMTATQPTVDGPSKKDWRGGRGAAQNIIPSSTGAAKAVALVLPELKGKLTGMAFRVPTPDVSVVDLTFKTAKATSYKEICAAMKQASEGSLAGILGYTDEEVVSTDFQ 290          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.833e-39
Identity = 85/208 (40.87%), Postives = 116/208 (55.77%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            RNP  +PW + G + V+E TGVF ++E A  H++ GAKKV+I+AP K D P +VVGVN   Y PD  ++SNASCTTNCLAP  KV+  +FGI++G MTT HS T  Q                   NI+P+ST                  G+A RVPT +          +K+   +E+ AA +E ++ +LKGIL   +E +VS DF
Sbjct:   82 RNPEEIPWAETGAEYVVESTGVFTEKEKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEKTYTPDIDVVSNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMAFRVPTVDVSVVDLTVTLAKEASYDEIKAAIKEESEGKLKGILGYTEEDVVSSDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_XANFL (Glyceraldehyde-3-phosphate dehydrogenase OS=Xanthobacter flavus GN=gap PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.394e-39
Identity = 86/211 (40.76%), Postives = 115/211 (54.50%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V + RNP  LP  +LG+D+ +E TG+F  R+ A  H+ AGAK+VL++AP  G   T V GVN +    +  ++SNASCTTNCLAP  KVL+   GI KG MTT H+YTGDQ                  +++PTST                 +G ++RVPTPN           + T  EE+N A   +A  +LKGIL   D+P VS+DF
Sbjct:   76 VTAVRNPAELPHKELGVDIALECTGIFTSRDKAAAHLAAGAKRVLVSAPADGADLTVVYGVNHEKLTNEHLVVSNASCTTNCLAPVAKVLNDAVGIEKGFMTTIHAYTGDQPTLDTMHKDLYRARAAAMSMIPTSTGAAKAVGLVLPELAGKLDGTSIRVPTPNVSVIDLKFVAKRATSKEEINEAIIAAASQQLKGILGFTDQPNVSIDF 286          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_BOLED (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Boletus edulis GN=GPD PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.394e-39
Identity = 88/213 (41.31%), Postives = 120/213 (56.34%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESAD-NELKGILSVCDEPLVSVDF 638
            V + R+P N+PWG +G   V+E TGVF   E A  H++ GAKKV+I+AP   D P +V GVN DAY P   +ISNASCTTNCLAP  KV++ KFGI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPT +          +K T  EE+  AF+E+++ +ELKGI++  ++ +VS DF
Sbjct:   54 VFAERDPANIPWGTVGAQYVVESTGVFTTIEKASAHLKGGAKKVIISAPSS-DAPMFVCGVNLDAYDPKHTVISNASCTTNCLAPLAKVVNDKFGIVEGLMTTVHATTATQKTVDGPSPKDWRGGRAVNNNIIPSSTGAAKAVGKVIPVLNGKLTGLAFRVPTLDVSVVDLVVRLAKPTSYEEIKTAFKEASESSELKGIVAYTEDAVVSTDF 265          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.394e-39
Identity = 85/208 (40.87%), Postives = 116/208 (55.77%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            RNP  +PWG+ G D V+E TGVF D++ A  H++ GAKKV+I+AP K D P +VVGVN   YK D  ++SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q                   NI+P+ST                  G+A RVPT +           K+   +E+ AA +E ++ +LKGI    ++ +VS DF
Sbjct:   82 RNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEKEYKSDLTVVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSMTATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKEATYDEIKAAIKEESEGKLKGIPGHTEDDVVSTDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.126e-39
Identity = 85/208 (40.87%), Postives = 115/208 (55.29%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            RNP  +PWG++G + V+E TGVF D++ A  H++ GAKKV+I+AP K D P +VVGVN   YK D  I+SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q                   NI+P+ST                  G+  RVPT +           K     E+ AA +E ++ +LKGIL   ++ +VS DF
Sbjct:   85 RNPEEIPWGEVGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEHEYKSDLTIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRAAGFNIIPSSTGAAKAVGKVLPVLNGKLTGMCFRVPTQDVSVVDLTVKLEKSATYGEIKAAIKEESEGKLKGILGYTEDDVVSTDF 291          
The following BLAST results are available for this feature:
BLAST of CX295716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_PICCI6.299e-4042.92Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_THEAQ8.227e-4042.51Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]
G3PE_MAIZE8.227e-4042.11Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR8.227e-4041.83Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_ANASP8.227e-4041.86Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3PC_CRAPL1.833e-3940.87Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_XANFL2.394e-3940.76Glyceraldehyde-3-phosphate dehydrogenase OS=Xantho... [more]
G3P_BOLED2.394e-3941.31Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PC_PETHY2.394e-3940.87Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA3.126e-3940.87Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC05075B06SK DroRLeaf1 Citrus clementina cDNA clone C05075B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295716 ID=CX295716; Name=CX295716; organism=Citrus clementina; type=EST; length=685bp
GAGGGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTG
GGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGG
TGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCC
CCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCT
TACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTG
CCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGG
GAACCATGACCACCACACACTCGTACACTGGCGACCAAAGGCTACTCGAT
GCTAGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGT
CCCAACATCAACTGGTGCGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCAC
TCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTC
TCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGA
GGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCC
TCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGAT
GTATCCTCAACCGTTGATTCATCTCTCACACTTGT
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