CX295716

Overview
NameCX295716
Unique NameCX295716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:530..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.126e-39
Identity = 86/208 (41.35%), Postives = 114/208 (54.81%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            RNP  +PWG+ G + V+E TGVF D++ A  H++ GAKKV+I+AP K D P +VVGVN   YK +  I+SNASCTTNCLAP  KV++ KFGI++G MTT HS T  Q                   NI+P+ST                  G+A RVPT +           K    EE+ A  +  ++ +LKGIL   +E +VS DF
Sbjct:   84 RNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKSNIDIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKAASYEEIKAVIKAESEGKLKGILGYTEEDVVSTDF 290          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.083e-39
Identity = 84/209 (40.19%), Postives = 117/209 (55.98%), Query Frame = 3
Query:   12 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            + R+P  +PWG  G D ++E TGVF  +E A  H++ GAKKV+I+AP   D P +V+GVN  +Y  D  ++SNASCTTNCLAP  KV++ KFGI++G MTT HSYT  Q                   NI+P+ST                  G+A+RVPT N           K T  +E+  A +++++NELKGIL   ++ +VS D
Sbjct:   77 AERDPAAIPWGTTGADYIVESTGVFTTQEKAAAHLKGGAKKVVISAPS-ADAPMFVMGVNNTSYTKDINVLSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSYTATQKVVDAPSSKDWRGGRTAAQNIIPSSTGAAKAVGKVIPTLNGKLTGMAMRVPTSNVSVVDLTCRLEKATSYDEIKKALKDASENELKGILGYTEDDIVSSD 284          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.083e-39
Identity = 85/208 (40.87%), Postives = 115/208 (55.29%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            RNP ++PWG+ G D V+E TGVF D++ A  H++ GAKKV+I+AP K D P +VVGVN   YK D  I+SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q                   NI+P+ST                  G++ RVPT +           K    +E+  A +E +  +LKGIL   ++ +VS DF
Sbjct:   84 RNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEHEYKSDLNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAIKEESQGKLKGILGYTEDDVVSTDF 290          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.965e-39
Identity = 85/207 (41.06%), Postives = 113/207 (54.59%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            R+P N+PWG  G+D V+E TGVF   E A  H+  GAKKV+I+AP   D P +V+GVN  +Y+PD  ++SNASCTTNCLAP  KV+   FGI +G MTT HSYT  Q                   NI+P+ST                  G+A+RVPT N           K    +++ AA + +++ ELKGIL   ++ LVS D
Sbjct:   80 RDPANIPWGKHGVDYVVESTGVFTTTEKAKAHLSGGAKKVIISAPS-ADAPMFVMGVNEKSYRPDISVLSNASCTTNCLAPLAKVIHDNFGIAEGLMTTIHSYTATQKTVDGPSHKDWRGGRTAAQNIIPSSTGAAKAVGKVIPALNGKLTGMAMRVPTANVSVVDLTCRTEKPVTYDQIKAAVKAASEGELKGILGYSEDALVSTD 285          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 6.965e-39
Identity = 83/209 (39.71%), Postives = 117/209 (55.98%), Query Frame = 3
Query:   12 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            + R+P N+PWG  G + ++E TGVF  +E A  H++ GAKKV+I+AP   D P +V+GVN + YK D  ++SNASCTTNCLAP  KV++  FGII+G MTT HSYT  Q                   NI+P+ST                  G+A+RVPT N           K    +++  A +++++NELKGIL   ++ +VS D
Sbjct:   77 TERDPANIPWGQDGAEYIVESTGVFTTQEKASAHLKGGAKKVVISAPS-ADAPMFVMGVNNETYKKDIQVLSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHSYTATQKVVDGPSAKDWRGGRTAATNIIPSSTGAAKAVGKVIPSLNGKLTGMAMRVPTSNVSVVDLTVRTEKAVTYDQIKDAVKKASENELKGILGYTEDDIVSTD 284          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.965e-39
Identity = 88/211 (41.71%), Postives = 113/211 (53.55%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V + RNP  LPW   G+D+ +E TG+F  +E A  H+Q GAK+VL++AP  G   T V GVN      D+ ++SNASCTTNCL+P  KVL    GI KG MTT HSYTGDQ                  +++PTST                 +G+++RVPTPN          ++ T  EEVNAA   +A   LKG+L    EP VS DF
Sbjct:   76 VTAIRNPAELPWA--GVDMAMECTGIFTTKEKAAAHLQNGAKRVLVSAPCDGADRTIVYGVNHATLTADDLVVSNASCTTNCLSPVAKVLHDAIGIAKGFMTTIHSYTGDQPTLDTMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKGRLDGVSIRVPTPNVSVVDLVFEAARDTTVEEVNAAIEAAACGPLKGVLGFTTEPNVSSDF 284          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 6.965e-39
Identity = 85/212 (40.09%), Postives = 117/212 (55.19%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V + R+P NL W ++G+D+V E TG+F+  E A KHI AGAKKV++T P K + P +V G N D Y+  + I+SNASCTTNCLAP  KV++  FGII+G MTT H+ T  Q                   NI+P+ST                  G+A RVPTPN           K    E++ AA + +A+ E+KG+L   ++ +VS DF
Sbjct:   74 VTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKYE-GQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDF 284          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 6.965e-39
Identity = 85/212 (40.09%), Postives = 117/212 (55.19%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V + R+P NL W ++G+D+V E TG+F+  E A KHI AGAKKV++T P K + P +V G N D Y+  + I+SNASCTTNCLAP  KV++  FGII+G MTT H+ T  Q                   NI+P+ST                  G+A RVPTPN           K    E++ AA + +A+ E+KG+L   ++ +VS DF
Sbjct:   74 VTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKYE-GQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDF 284          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_ESCHE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia hermannii GN=gap PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.188e-38
Identity = 84/212 (39.62%), Postives = 115/212 (54.25%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V + ++P NL W ++G+D+V E TG+F+  E A KHI AGAKKV++T P K D P +V G N D Y   + I+SNASCTTNCLAP  KV++  FGII+G MTT H+ T  Q                   NI+P+ST                  G+A RVPTPN           K    E++  A + +A+ E+KG+L   ++ +VS DF
Sbjct:   59 VTAEKDPANLKWNEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDDTPMFVKGANFDKYN-GQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAASYEDIKKAIKAAAEGEMKGVLGYTEDDVVSTDF 269          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_CORGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Corynebacterium glutamicum GN=gap PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.188e-38
Identity = 89/211 (42.18%), Postives = 111/211 (52.61%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 635
            V + R+P NL W    +D+VIE TG F D   A  HI+AGAKKV+I+AP   +  T+V GVN ++Y P+   +IS ASCTTNCLAP  KVL+ KFGI  G MTT H+YTGDQ                  NIVPTST                 +G ALRVP               +   E +NAA +E+A  E    L+  +EPLVS D
Sbjct:   75 VYAERDPKNLDWAAHNVDIVIESTGFFTDANAAKAHIEAGAKKVIISAPASNEDATFVYGVNHESYDPENHNVISGASCTTNCLAPMAKVLNDKFGIENGLMTTVHAYTGDQRLHDAPHRDLRRARAAAVNIVPTSTGAAKAVALVLPELKGKLDGYALRVPVITGSATDLTFNTKSEVTVESINAAIKEAAVGEFGETLAYSEEPLVSTD 285          
The following BLAST results are available for this feature:
BLAST of CX295716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3PC_MAGLI3.126e-3941.35Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ASPNG4.083e-3940.19Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3PC_SINAL4.083e-3940.87Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PARBA6.965e-3941.06Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_EMENI6.965e-3939.71Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P2_RHOSH6.965e-3941.71Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3P1_SALTY6.965e-3940.09Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI6.965e-3940.09Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P_ESCHE1.188e-3839.62Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_CORGL1.188e-3842.18Glyceraldehyde-3-phosphate dehydrogenase OS=Coryne... [more]

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Properties
Property NameValue
Genbank descriptionC05075B06SK DroRLeaf1 Citrus clementina cDNA clone C05075B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295716 ID=CX295716; Name=CX295716; organism=Citrus clementina; type=EST; length=685bp
GAGGGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTG
GGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGG
TGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCC
CCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCT
TACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTG
CCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGG
GAACCATGACCACCACACACTCGTACACTGGCGACCAAAGGCTACTCGAT
GCTAGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGT
CCCAACATCAACTGGTGCGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCAC
TCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTC
TCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGA
GGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCC
TCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGAT
GTATCCTCAACCGTTGATTCATCTCTCACACTTGT
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