CX295716

Overview
NameCX295716
Unique NameCX295716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:530..1214. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.514e-38
Identity = 88/212 (41.51%), Postives = 119/212 (56.13%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V   R+P  LPWG+ GID+ I+ TGVF + + A KHI AGAKKV+ITAP     P +V+GVN + Y   E I+SNASCTTNCLAP  KV+D++FGI +G MTT HS T  Q                   NI+P+ST                  G+A RVPT +          +K+T  +E+ AA + +++ +LKGIL   ++ +VS DF
Sbjct:   74 VFQERDPAQLPWGEEGIDIAIDSTGVFKELDSAQKHIDAGAKKVVITAP-SSTAPMFVMGVNEEKY-AGETIVSNASCTTNCLAPLAKVIDEQFGIEEGLMTTVHSLTATQKTVDGPSMKDWRGGRTASGNIIPSSTGAAKAVGKVLPQLNGKLTGMAFRVPTVDVSVVDLTVKLNKETTYDEIKAAIKAASEGKLKGILGYTEDAVVSTDF 283          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.514e-38
Identity = 85/208 (40.87%), Postives = 112/208 (53.85%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            RNP  +PWG+ G + V+E TGVF D++ A  H++ GAKKV+I+AP K D P +VVGVN D Y  D  I+SNASCTTNCLAP  KV+   FGII+G MTT H+ T  Q                   NI+P+ST                  G++ RVPT +           K    EE+  A + +++  LKGI+   +E LVS DF
Sbjct:   82 RNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEDKYTSDVNIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPELNGKLTGMSFRVPTVDVSVVDLTVRIEKGASYEEIKKAIKAASEGPLKGIMGYVEEDLVSTDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 5.896e-38
Identity = 90/219 (41.10%), Postives = 119/219 (54.34%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFV----DREGAGKHIQ-AGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVNAAFRESADN-ELKGILSVCDEPLVSVDFR 641
            +++ R+P NLPW  LGID+VIE TGVF     D+ G   H+  AGAKKV++T P K +I T V+GVN      D   +SNASCTTNCLAP  KVL + FGI +G MTT H+YT DQ                  +I+PTST                 NG ++RVP P            KK    EE+N+  R++++  ELKGIL   ++P+VS D +
Sbjct:   71 IIAERDPKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGLMTTVHAYTNDQRILDLPHSDLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIK 289          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PG_CRIFA (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Crithidia fasciculata GN=GAPDG PE=3 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 5.896e-38
Identity = 88/214 (41.12%), Postives = 118/214 (55.14%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVL-DQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V ++RNP +LPWG LG+D VIE TG+F D+  A  H++ GAKKV+I+AP  G   T V+GVN   Y P    ++SNASCTTNCLAP V VL  + FGI  G MTT HSYT  Q                   NI+P++T                  G++ RVPTP+          ++ T  +E++AA ++++   +KGIL   DE LVS DF
Sbjct:   89 VKADRNPADLPWGKLGVDYVIESTGLFTDKAKAEGHVKGGAKKVVISAPASGGAKTIVMGVNQHEYNPATHHVVSNASCTTNCLAPIVHVLTKENFGIETGLMTTIHSYTATQKTVDGVSIKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDAALKKASQTYMKGILGFTDEELVSSDF 302          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.896e-38
Identity = 85/208 (40.87%), Postives = 113/208 (54.33%), Query Frame = 3
Query:   18 RNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD-QXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            RNP   PWG+ G + V+E TGVF D++ A  H++ GAKKV+I+AP  G+ P +VVGVN   YK D  I+SNASCTTNCLAP  KVL+ KFGI++G MTT HS T   +                  NI+P+ST                  G+A RVPT +           K    +E+ AA +  ++  LKGIL   ++ +VS DF
Sbjct:   81 RNPEEDPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS-GNAPMFVVGVNEKEYKKDIDIVSNASCTTNCLAPLAKVLNDKFGIVEGLMTTVHSITATRKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTARLEKAATYDEIKAAIKHESETSLKGILGYTEDDVVSTDF 287          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.896e-38
Identity = 87/212 (41.04%), Postives = 115/212 (54.25%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V   R+P NLPWG   ID+ I+ TGVF + + A KHI AGAKKV+ITAP     P +VVGVN D Y  D  I+SNASCTTNCLAP  KV+D+ FGI +G MTT HS T  Q                   NI+P+ST                  G+A RVPT +           K+T  +E+    +++++ +LKG+L   ++ +VS DF
Sbjct:   74 VHQERDPANLPWGSENIDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSS-TAPMFVVGVNEDKYTSDLKIVSNASCTTNCLAPLAKVIDEAFGIEEGLMTTVHSLTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPQLQGKLTGMAFRVPTVDVSVVDLTVKLQKETTYDEIKKVIKQASEGKLKGVLGYTEDAVVSSDF 284          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.896e-38
Identity = 88/214 (41.12%), Postives = 116/214 (54.21%), Query Frame = 3
Query:   12 SNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNE----LKGILSVCDEPLVSVDF 638
            + R P N+ W D G + ++E TGVF   E A +H++ GAKKV+ITAPG G +PTYVVGVN D Y P E +ISNASCTTNCLA   KV++ KFGI++G MTT H+ T  Q                   NI+P ST                  G+A RVPT +           K+T  ++V  A R++AD +     KGI+   +E +VS DF
Sbjct:   76 AEREPANIKWADCGAEYIVESTGVFKTEELAKEHLKGGAKKVVITAPGSG-VPTYVVGVNLDKYDPKEVVISNASCTTNCLAVLAKVINDKFGIVEGLMTTVHATTATQKTVDAPAKKDWRSGRSVTNNIIPASTGAAKAVTKAIPDLEGKLTGLAFRVPTLDVSVVDLVVRLEKETSYDDVKKAMRDAADGKHPGIEKGIVDYTEEDVVSTDF 288          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3P_KLEPN (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Klebsiella pneumoniae GN=gap PE=3 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 83/212 (39.15%), Postives = 115/212 (54.25%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V + R+P NL W ++G+D+V E TG+F+  E A KHI AGAKKV++T P K + P +V G N DAY   + I+SNASCTTNCLAP  KV++  FGI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPTPN           K    EE+  A + +++  +KG+L   ++ +VS DF
Sbjct:   68 VTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVRGANFDAY-AGQDIVSNASCTTNCLAPLAKVINDNFGIVEGLMTTVHATTATQKTVDGPSHKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAASYEEIKKAIKAASEGAMKGVLGYTEDDVVSTDF 278          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PG_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Leishmania mexicana GN=GAPG PE=1 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 89/214 (41.59%), Postives = 116/214 (54.21%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVL-DQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            V + RNP +LPWG LG+D VIE TG+F D+  A  HI+ GAKKV+I+AP  G   T V+GVN   Y P    ++SNASCTTNCLAP V VL  + FGI  G MTT HSYT  Q                   NI+P++T                  G++ RVPTP+          ++ T  +E++ A +++A   +KGIL   DE LVS DF
Sbjct:   89 VKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIVMGVNQHEYSPASHHVVSNASCTTNCLAPIVHVLTKENFGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGMVIPSTKGKLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELVSADF 302          
BLAST of CX295716 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.700e-38
Identity = 84/212 (39.62%), Postives = 116/212 (54.72%), Query Frame = 3
Query:    6 VVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 638
            +  +R+P  +PW + G D V+E TGVF  +E A KH   GAKKV+I+AP K D P +V GVN D Y PD  +ISNASCTTNCLAP VKV+ +K+GI +G MTT H+ T  Q                   NI+P+ST                  G+A RVPT +          + +T  +++ A  + +A++ +KGIL   +E +VS DF
Sbjct:   76 IYGHRDPAEIPWAEAGADYVVESTGVFTLKEKAEKHFTGGAKKVIISAPSK-DAPMFVCGVNEDKYTPDLNVISNASCTTNCLAPLVKVIHEKYGIEEGLMTTVHATTATQKTVDGPSQKDWRGGRGAGANIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTSDVSVVDLTVRLATETSYDDIKATMKAAAEDSMKGILKYTEEAVVSTDF 286          
The following BLAST results are available for this feature:
BLAST of CX295716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_ASHGO4.514e-3841.51Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3PD_MAIZE4.514e-3840.87Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_BORBU5.896e-3841.10Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]
G3PG_CRIFA5.896e-3841.12Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PC_PETCR5.896e-3840.87Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_CANGA5.896e-3841.04Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P1_AGABI5.896e-3841.12Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3P_KLEPN7.700e-3839.15Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PG_LEIME7.700e-3841.59Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PC_GRAVE7.700e-3839.62Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC05075B06SK DroRLeaf1 Citrus clementina cDNA clone C05075B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295716 ID=CX295716; Name=CX295716; organism=Citrus clementina; type=EST; length=685bp
GAGGGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTG
GGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGG
TGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCC
CCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCT
TACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTG
CCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGG
GAACCATGACCACCACACACTCGTACACTGGCGACCAAAGGCTACTCGAT
GCTAGCCACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGT
CCCAACATCAACTGGTGCGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCAC
TCAAAGGCAAACTAAACGGCATTGCCCTTCGTGTGCCAACACCAAACGTC
TCGGTTGTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTCGCAGAAGA
GGTGAACGCCGCTTTCAGAGAAAGCGCTGACAATGAACTGAAAGGGATCC
TCTCCGTGTGCGACGAGCCCCTCGTTTCGGTCGACTTCAGGTGCTCTGAT
GTATCCTCAACCGTTGATTCATCTCTCACACTTGT
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